[Home] | [Total List]

[175184_at]

Description AV200589_rc /REP_DB=TREMBL Accession /GB=AV200589 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577e5 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 50.8
(3)
A 		30.7
(-1.6)
A 		24.7
(-3)
A 		45.8
(1.9)
A 		26
B 47.4
(0.7)
A 		20.9
(-3)
A 		37.4
(-0.7)
A 		63.9
(3)
A 		43
C 61.2
(2.1)
A 		34.7
(-3)
A 		43.6
(-1.3)
A 		65.9
(3)
A 		31
avr 53.1
(1.9) 		28.8
(-3) 		35.2
(-1.7) 		58.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 91.4
(3)
A 		19.7
(-2.4)
A 		42.9
(-0.7)
A 		12
(-3)
A 		52.3
(0)
A 		18
(-2.5)
A 		79
B 71
(3)
M 		70.5
(2.9)
A 		19
(-2.5)
A 		24.1
(-2)
A 		14.6
(-3)
A 		47.9
(0.5)
A 		56
C 19.8
(-0.8)
A 		44.1
(3)
A 		5.7
(-3)
A 		29.7
(0.8)
A 		12.4
(-2)
A 		15.4
(-1.5)
A 		38
avr 60.7
(3) 		44.8
(0.5) 		22.5
(-2.9) 		21.9
(-3) 		26.4
(-2.3) 		27.1
(-2.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 18.5
(3)
A 		6.7
(-2.9)
A 		6.4
(-3)
A 		6.7
(-2.9)
A 		12
B 15.1
(3)
A 		5.2
(-3)
A 		8.7
(-0.9)
A 		13.6
(2.1)
A 		10
C 20.2
(3)
A 		10
(-3)
A 		15.2
(0.1)
A 		11.1
(-2.4)
A 		10
avr 17.9
(3) 		7.3
(-3) 		10.1
(-1.4) 		10.5
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.9
(3)
A 		7
(-1.3)
A 		9.3
(-0.3)
A 		3.1
(-3)
A 		15.8
(2.5)
A 		4.4
(-2.4)
A 		14
B 24.7
(3)
M 		23.5
(2.6)
A 		4.6
(-3)
A 		6.4
(-2.5)
A 		5.9
(-2.6)
A 		17.8
(0.9)
A 		20
C 7.3
(-0.1)
A 		13.5
(3)
A 		1.4
(-3)
A 		6
(-0.7)
A 		4
(-1.7)
A 		5.2
(-1.1)
A 		12
avr 16.3
(3) 		14.7
(2.1) 		5.1
(-3) 		5.2
(-2.9) 		8.6
(-1.1) 		9.1
(-0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21618
Sequence Type Exemplar sequence
Representative Public ID AV200589 NCBI
Target Description AV200589_rc /REP_DB=TREMBL Accession /GB=AV200589 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200589
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200589 AV200589_rc /REP_DB=TREMBL Accession /GB=AV200589 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577e5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067727 11/11 Negative Strand Matching Probes A 
SNAP00000028254 11/11 Negative Strand Matching Probes None
GENEFINDER00000028269 11/11 Negative Strand Matching Probes None
Y41D4A.5 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1733181-1733461(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175184_AT
ttctctccagacggacatccatgatctggccattctcgataatgaagttgatgaactttt
cgacattctcctgttgtttgattctccatttttagacatctcattaaatattcatcatcg
tcaaagagtttctcctcttctaaagtgatctcgtaatcaccgaaaagttcactttcaccg
acttgttctggccagtatctttcgcattttatcttgttcaactcgactagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTCCAGACGGACATCCATGAT 118 691 26 Antisense
GGACATCCATGATCTGGCCATTCTC 365 525 38 Antisense
GATGAACTTTTCGACATTCTCCTGT 86 413 75 Antisense
TCTCCTGTTGTTTGATTCTCCATTT 332 611 92 Antisense
ATCTCATTAAATATTCATCATCGTC 280 33 123 Antisense
CATCATCGTCAAAGAGTTTCTCCTC 168 213 138 Antisense
GTTTCTCCTCTTCTAAAGTGATCTC 67 451 153 Antisense
GAAAAGTTCACTTTCACCGACTTGT 455 353 187 Antisense
GACTTGTTCTGGCCAGTATCTTTCG 538 371 205 Antisense
GTATCTTTCGCATTTTATCTTGTTC 222 455 220 Antisense
TTTATCTTGTTCAACTCGACTAGTT 391 673 233 Antisense
Sequence Source Affymetrix Proprietary Database