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[175183_at]

Description AU114949_rc /REP_DB=TREMBL Accession /GB=AU114949 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk723h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 92      6grp_total > 89      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 270.6
(3)
P 		119.8
(-3)
P 		161.4
(-1.3)
P 		185.9
(-0.4)
P 		151
B 277.9
(-0)
P 		140.2
(-3)
P 		144.9
(-2.9)
P 		416.3
(3)
P 		276
C 377.1
(1.4)
P 		207.7
(-2.4)
P 		181.2
(-3)
P 		450.8
(3)
P 		270
avr 308.5
(1.7) 		155.9
(-3) 		162.5
(-2.8) 		351
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 168.3
(-2)
P 		183.2
(-1.6)
P 		269.2
(0.6)
P 		130.4
(-3)
P 		360.1
(3)
P 		331.6
(2.3)
P 		230
B 266.6
(-1.8)
P 		332.8
(-0.5)
P 		250
(-2.1)
P 		202.9
(-3)
P 		388.7
(0.5)
P 		518
(3)
P 		315
C 191.8
(-1.8)
P 		312.3
(1.3)
P 		174.2
(-2.3)
P 		147.5
(-3)
P 		303.6
(1.1)
P 		378.2
(3)
P 		231
avr 208.9
(-1.8) 		276.1
(-0.2) 		231.1
(-1.3) 		160.3
(-3) 		350.8
(1.6) 		409.3
(3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 98.5
(3)
P 		26
(-3)
P 		42.2
(-1.7)
P 		27.2
(-2.9)
P 		73
B 88.6
(3)
P 		34.6
(-2.9)
P 		33.6
(-3)
P 		88.7
(3)
P 		55
C 124.8
(3)
P 		59.7
(-3)
P 		63.1
(-2.7)
P 		76
(-1.5)
P 		65
avr 104
(3) 		40.1
(-3) 		46.3
(-2.4) 		64
(-0.8) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 31
(-3)
P 		65.1
(-0.4)
P 		58.6
(-0.9)
P 		33.1
(-2.8)
P 		108.6
(3)
P 		80.7
(0.8)
P 		78
B 92.8
(-1.3)
P 		110.8
(-0.5)
P 		60.7
(-2.7)
P 		53.7
(-3)
P 		157.9
(1.5)
P 		193.2
(3)
P 		140
C 71.1
(-0.4)
P 		95.3
(1.1)
P 		44.3
(-2.1)
P 		29.7
(-3)
P 		98.2
(1.2)
P 		126.6
(3)
P 		97
avr 65
(-1.3) 		90.4
(0.3) 		54.5
(-2) 		38.8
(-3) 		121.6
(2.2) 		133.5
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20989
Sequence Type Exemplar sequence
Representative Public ID AU114949 NCBI
Target Description AU114949_rc /REP_DB=TREMBL Accession /GB=AU114949 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk723h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066695 NCBI Caenorhabditis elegans F55H2.7 (F55H2.7) mRNA, complete cds. 11/11 A 
F55H2.7 ENSEMBL cdna:known chromosome:CEL140:III:9513309:9516144:-1 gene:F55H2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007119 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007122 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9513314-9514564(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55H2.7
Entrez Gene 176340 Entrez gene
SwissProt P34467 EMBL-EBI
WormBase CE34033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81604 Hypothetical protein F55H2.7 [Caenorhabditis elegans] ref|NP_499096.2| F55H2.7 [Caenorhabditis elegans] sp|P34467|YMF7_CAEEL Hypothetical protein F55H2.7 in chromosome III 0.0
blast CAE65193 Hypothetical protein CBG10068 [Caenorhabditis briggsae] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:175183_AT
gaaaacatcgattctttctccacgtcgacgacagaaaagaatgcggtcactttcaagtca
aggagacatttaatttgtcatataacattctcattattactattcgatctcttaaaatgt
gtattatctcactacaatatgtaactgtatatttgtatcaattctagtactggttattcg
tttatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACATCGATTCTTTCTCCACGT 457 355 81 Antisense
AAGAATGCGGTCACTTTCAAGTCAA 22 153 117 Antisense
ATGCGGTCACTTTCAAGTCAAGGAG 73 41 121 Antisense
TAATTTGTCATATAACATTCTCATT 77 635 151 Antisense
CATTCTCATTATTACTATTCGATCT 118 217 166 Antisense
CTCATTATTACTATTCGATCTCTTA 612 229 170 Antisense
ATTCGATCTCTTAAAATGTGTATTA 593 9 182 Antisense
ATGTGTATTATCTCACTACAATATG 416 49 197 Antisense
TGTAACTGTATATTTGTATCAATTC 280 559 220 Antisense
GTATCAATTCTAGTACTGGTTATTC 99 453 235 Antisense
TAGTACTGGTTATTCGTTTATTTCT 177 653 245 Antisense
Sequence Source Affymetrix Proprietary Database