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[175181_at]

Description AV199221_rc /REP_DB=TREMBL Accession /GB=AV199221 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542f1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 20      6grp_total > 31      4grp_total > 19      6grp_cgc > 71      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 126.9
(-0.7)
P 		146.1
(0.2)
M 		78
(-3)
P 		205.9
(3)
P 		128
B 93.4
(-2.4)
P 		132.3
(0.7)
P 		85.8
(-3)
P 		161
(3)
P 		75
C 111.8
(-0.3)
P 		96.6
(-3)
A 		108.8
(-0.8)
P 		130
(3)
P 		33
avr 110.7
(-1.4) 		125
(-0.3) 		90.9
(-3) 		165.6
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 290.3
(2.3)
P 		80.9
(-2.1)
P 		325.4
(3)
P 		79.8
(-2.1)
P 		233.9
(1.1)
P 		37.2
(-3)
A 		288
B 270.9
(1.1)
P 		270.9
(1.1)
P 		313.7
(3)
P 		235.5
(-0.4)
P 		176.7
(-3)
P 		185.7
(-2.6)
P 		137
C 35.5
(-3)
P 		309.1
(3)
P 		73.2
(-2.2)
P 		302.7
(2.9)
P 		48.4
(-2.7)
A 		110.3
(-1.4)
P 		274
avr 198.9
(1.2) 		220.3
(2.2) 		237.4
(3) 		206
(1.5) 		153
(-1) 		111.1
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 46.2
(3)
P 		31.7
(-0.4)
M 		20.4
(-3)
P 		30.1
(-0.7)
P 		26
B 29.8
(1.1)
P 		32.7
(2.3)
P 		19.9
(-3)
P 		34.3
(3)
P 		14
C 37
(2.7)
P 		27.8
(-0.8)
A 		37.9
(3)
P 		21.9
(-3)
P 		16
avr 37.7
(3) 		30.7
(-0.6) 		26.1
(-3) 		28.8
(-1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 53.5
(1.3)
P 		28.8
(-1.1)
P 		70.9
(3)
P 		20.2
(-1.9)
P 		70.6
(3)
P 		9.1
(-3)
A 		62
B 94.3
(3)
P 		90.2
(2.2)
P 		76.2
(-0.4)
P 		62.4
(-3)
P 		71.8
(-1.2)
P 		69.3
(-1.7)
P 		32
C 13.2
(-3)
P 		94.3
(3)
P 		18.6
(-2.6)
P 		60.9
(0.5)
P 		15.7
(-2.8)
A 		36.9
(-1.2)
P 		81
avr 53.7
(-0.2) 		71.1
(3) 		55.2
(0.1) 		47.8
(-1.3) 		52.7
(-0.4) 		38.4
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21645
Sequence Type Exemplar sequence
Representative Public ID AV199221 NCBI
Target Description AV199221_rc /REP_DB=TREMBL Accession /GB=AV199221 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199221
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199221 AV199221_rc /REP_DB=TREMBL Accession /GB=AV199221 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542f1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026095 11/11 Negative Strand Matching Probes None
SNAP00000023740 11/11 Negative Strand Matching Probes None
GENEFINDER00000023991 11/11 Negative Strand Matching Probes None
B0350.2a 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5985631-5985909(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175181_AT
ctcaagcagagcggcggcaagggatgcggaacgggtgcgttcgaattgtttacagctggc
aattggttcatcttcttcttgattatcaaatggagatgatccatctttttcagctcctcc
tgcttccaaaaagattgagaatcttcttggctcttcactttcttgtggatgttcagcatg
ttcaccatcccaagattccacttgaaaatgactggccgagttcacatgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAGCAGAGCGGCGGCAAGGGAT 654 227 13 Antisense
GCAAGGGATGCGGAACGGGTGCGTT 103 315 29 Antisense
GGGTGCGTTCGAATTGTTTACAGCT 615 495 45 Antisense
ACAGCTGGCAATTGGTTCATCTTCT 293 109 64 Antisense
GGTTCATCTTCTTCTTGATTATCAA 412 507 77 Antisense
GAGATGATCCATCTTTTTCAGCTCC 122 397 105 Antisense
TTGAGAATCTTCTTGGCTCTTCACT 44 707 147 Antisense
GGCTCTTCACTTTCTTGTGGATGTT 31 539 161 Antisense
TGTGGATGTTCAGCATGTTCACCAT 248 555 176 Antisense
TTCACCATCCCAAGATTCCACTTGA 210 687 193 Antisense
ATGACTGGCCGAGTTCACATGATGA 456 45 220 Antisense
Sequence Source Affymetrix Proprietary Database