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[175179_at]

Description AV199377_rc /REP_DB=TREMBL Accession /GB=AV199377 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545a6 : 3prime end, single read.
Cluster 6grp_total > 33      4grp_total > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 56.8
(3)
A 		6.7
(-3)
A 		7.9
(-2.9)
A 		23.5
(-1)
A 		50
B 4.9
(-3)
A 		10.3
(3)
A 		5.1
(-2.8)
A 		10.2
(2.9)
A 		5
C 37.1
(3)
A 		4.8
(-2.7)
A 		21.4
(0.2)
A 		3.1
(-3)
A 		34
avr 32.9
(3) 		7.3
(-3) 		11.5
(-2) 		12.3
(-1.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 45.1
(1.2)
A 		6.8
(-2.7)
A 		62.2
(3)
A 		4
(-3)
A 		10.3
(-2.4)
A 		9.4
(-2.4)
A 		58
B 15.6
(-1.3)
A 		40.9
(3)
A 		8.5
(-2.5)
A 		5.4
(-3)
A 		10.9
(-2.1)
A 		11.3
(-2)
A 		36
C 10.6
(-1.5)
A 		19.9
(0.8)
A 		7.7
(-2.3)
A 		28.8
(3)
A 		28.2
(2.9)
A 		4.7
(-3)
A 		24
avr 23.8
(2.2) 		22.5
(1.8) 		26.1
(3) 		12.7
(-1.6) 		16.5
(-0.3) 		8.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.7
(3)
A 		1.5
(-3)
A 		2.1
(-2.8)
A 		3.4
(-2.4)
A 		19
B 1.6
(-1.2)
A 		2.5
(3)
A 		1.2
(-3)
A 		2.2
(1.6)
A 		1
C 12.3
(3)
A 		1.4
(-2.5)
A 		7.5
(0.6)
A 		0.5
(-3)
A 		12
avr 11.5
(3) 		1.8
(-3) 		3.6
(-1.9) 		2
(-2.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.3
(0.5)
A 		2.4
(-2.3)
A 		13.5
(3)
A 		1
(-3)
A 		3.1
(-2)
A 		2.3
(-2.4)
A 		13
B 5.4
(-1)
A 		13.6
(3)
A 		2.1
(-2.7)
A 		1.4
(-3)
A 		4.4
(-1.5)
A 		4.2
(-1.6)
A 		12
C 3.9
(-1.2)
A 		6.1
(0.6)
A 		2
(-2.7)
A 		5.8
(0.4)
A 		9.1
(3)
A 		1.6
(-3)
A 		8
avr 5.9
(1.1) 		7.4
(3) 		5.9
(1.1) 		2.7
(-3) 		5.5
(0.6) 		2.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21148
Sequence Type Exemplar sequence
Representative Public ID AV199377 NCBI
Target Description AV199377_rc /REP_DB=TREMBL Accession /GB=AV199377 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199377
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199377 AV199377_rc /REP_DB=TREMBL Accession /GB=AV199377 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545a6 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3682846-3683108(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175179_AT
ttttcacggtatacaacagggcagtgcagccaagttgccgccaacttcggcaatcgctgt
ttgccattttgcatgaactattactgaaagagcttcccattgaatttatcttaaaacatt
ctcggattttagtttcagaaatcaataatttcacggagcctcaaggaaaaatcgaagaaa
ctgttatggtatcaaataactcgacgagaaccattgacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACGGTATACAACAGGGCAGT 101 675 22 Antisense
CAGGGCAGTGCAGCCAAGTTGCCGC 134 209 38 Antisense
GCCAAGTTGCCGCCAACTTCGGCAA 448 275 50 Antisense
GCCAACTTCGGCAATCGCTGTTTGC 612 277 61 Antisense
CAATCGCTGTTTGCCATTTTGCATG 28 183 72 Antisense
GTTTGCCATTTTGCATGAACTATTA 314 309 80 Antisense
GAACTATTACTGAAAGAGCTTCCCA 536 349 96 Antisense
AGAGCTTCCCATTGAATTTATCTTA 575 69 110 Antisense
AACATTCTCGGATTTTAGTTTCAGA 401 137 136 Antisense
ATCAATAATTTCACGGAGCCTCAAG 361 25 162 Antisense
TAACTCGACGAGAACCATTGACAAG 185 639 218 Antisense
Sequence Source Affymetrix Proprietary Database