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[175178_at]

Description AV184049_rc /REP_DB=TREMBL Accession /GB=AV184049 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 41      6grp_total > 34      4grp_total > 62      6grp_highest_sub > De      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 472
1 2 3 4 range
A 737.6
(3)
P 		396.8
(-2.1)
P 		611.3
(1.1)
P 		338.5
(-3)
P 		399
B 606.3
(2.5)
P 		621.9
(3)
P 		581.5
(1.8)
P 		423.1
(-3)
P 		199
C 697.2
(1.5)
P 		571.1
(-0.2)
P 		810.1
(3)
P 		367.1
(-3)
P 		443
avr 680.4
(3) 		529.9
(0) 		667.6
(2.7) 		376.2
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 532.6
(-2.7)
P 		665.7
(0.1)
P 		799.8
(3)
P 		538.5
(-2.6)
P 		518.7
(-3)
P 		624.1
(-0.8)
P 		281
B 1006.3
(3)
P 		883.7
(1.2)
P 		645.3
(-2.3)
P 		639.7
(-2.3)
P 		594.6
(-3)
P 		687.4
(-1.6)
P 		412
C 761.3
(2.1)
P 		681.3
(0.7)
P 		810.3
(3)
P 		488.2
(-2.9)
P 		480.2
(-3)
P 		570.5
(-1.4)
P 		330
avr 766.7
(3) 		743.6
(2.4) 		751.8
(2.6) 		555.5
(-2.4) 		531.2
(-3) 		627.3
(-0.6) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 268.6
(3)
P 		86.1
(-2)
P 		159.8
(0)
P 		49.5
(-3)
P 		219
B 193.3
(3)
P 		153.6
(0.7)
P 		134.7
(-0.4)
P 		90.2
(-3)
P 		103
C 230.8
(1.6)
P 		164.2
(-0.2)
P 		282.3
(3)
P 		61.9
(-3)
P 		220
avr 230.9
(3) 		134.6
(-0.5) 		192.3
(1.6) 		67.2
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 98.2
(-3)
P 		236.7
(3)
P 		174.2
(0.3)
P 		136.6
(-1.3)
P 		156.5
(-0.5)
P 		152
(-0.7)
P 		139
B 350.2
(3)
P 		294.1
(1.3)
P 		156.7
(-3)
P 		169.4
(-2.6)
P 		241.6
(-0.4)
P 		256.3
(0.1)
P 		194
C 282.2
(3)
P 		207.9
(0.6)
P 		206.2
(0.5)
P 		98.2
(-3)
P 		155.4
(-1.1)
P 		191
(0)
P 		184
avr 243.5
(2.9) 		246.2
(3) 		179
(-0.6) 		134.7
(-3) 		184.5
(-0.3) 		199.8
(0.5) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20933
Sequence Type Exemplar sequence
Representative Public ID AV184049 NCBI
Target Description AV184049_rc /REP_DB=TREMBL Accession /GB=AV184049 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk659e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066501(11), NM_066500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066501 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-10) (dnj-10) mRNA, complete cds. 11/11 None
NM_066500 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-10) (dnj-10) mRNA, complete cds. 11/11 A 
F22B7.5a.2 ENSEMBL cdna:known chromosome:CEL140:III:8631061:8633395:1 gene:F22B7.5 11/11 None
F22B7.5a.1 ENSEMBL cdna:known chromosome:CEL140:III:8631068:8633395:1 gene:F22B7.5 10/11 None
F22B7.5b ENSEMBL cdna:known chromosome:CEL140:III:8631078:8633431:1 gene:F22B7.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003831 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003840 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8632590-8633380(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22B7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68342 Dnaj domain (prokaryotic heat shock protein) protein 10, isoform a [Caenorhabditis elegans] ref|NP_498902.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-10) [Caenorhabditis elegans] sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain protein 10) 0.0
blast AAK68343 Dnaj domain (prokaryotic heat shock protein) protein 10, isoform b [Caenorhabditis elegans] ref|NP_498901.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-10) [Caenorhabditis elegans] 0.0
blast CAE75019 Hypothetical protein CBG22923 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 9.99999999819959E-24
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 8.99999968283527E-24
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.1E-33
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 1.9E-60
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 1.1E-40
Sequence
Target Sequence 
>C. ELEGANS:175178_AT
gaagtctgaagataagtccgaggagaagtccgagtcaaaagaagagccaaaaaacgaaga
atctagtgaaacccccgagaaaaaagctgcagaatcctaatatttgtcgcaatttatcga
ttactgtcccaatctttccagttttgttcccttgaaatttgttttgtctcatttgtagtt
ctattagagtgattatagtgtcttttttgttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCTGAAGATAAGTCCGAGGAG 280 335 100 Antisense
AAGTCCGAGGAGAAGTCCGAGTCAA 709 155 113 Antisense
CGAAGAATCTAGTGAAACCCCCGAG 353 251 154 Antisense
GAAACCCCCGAGAAAAAAGCTGCAG 79 317 167 Antisense
GCTGCAGAATCCTAATATTTGTCGC 673 295 185 Antisense
GTCGCAATTTATCGATTACTGTCCC 149 475 205 Antisense
GATTACTGTCCCAATCTTTCCAGTT 65 431 218 Antisense
TGTCCCAATCTTTCCAGTTTTGTTC 694 557 224 Antisense
TGTTCCCTTGAAATTTGTTTTGTCT 135 563 244 Antisense
GTTTTGTCTCATTTGTAGTTCTATT 95 449 260 Antisense
GTGATTATAGTGTCTTTTTTGTTAC 159 485 288 Antisense
Sequence Source Affymetrix Proprietary Database