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[175176_at] REV protein (anti-repression transactivator protein)

Description AU113312_rc /REP_DB=TREMBL Accession /GB=AU113312 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 77      6grp_total > 47      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 1835.9
(3)
P 		1056.6
(-2.5)
P 		1620.5
(1.5)
P 		985.9
(-3)
P 		850
B 1816.1
(3)
P 		1230.4
(-1.7)
P 		1663.6
(1.8)
P 		1073.7
(-3)
P 		742
C 1800.4
(3)
P 		1683.9
(2.2)
P 		1653
(2)
P 		919.9
(-3)
P 		881
avr 1817.5
(3) 		1323.6
(-0.6) 		1645.7
(1.7) 		993.2
(-3) 		824

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 842
1 2 3 4 5 6 range
A 1631.8
(3)
P 		1466.4
(1)
P 		1176.7
(-2.4)
P 		1128.2
(-3)
P 		1360.6
(-0.2)
P 		1494.6
(1.4)
P 		504
B 1798.3
(2.9)
P 		1500.5
(0.5)
P 		1573.3
(1.1)
P 		1493.7
(0.5)
P 		1062.6
(-3)
P 		1811.5
(3)
P 		749
C 1600.9
(2.5)
P 		1455.5
(1.2)
P 		1184.8
(-1.1)
P 		1340.7
(0.2)
P 		969.8
(-3)
P 		1664.5
(3)
P 		695
avr 1677
(3) 		1474.1
(0.8) 		1311.6
(-1) 		1320.9
(-0.9) 		1131
(-3) 		1656.9
(2.8) 		546
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 668.5
(3)
P 		229.4
(-2)
P 		423.6
(0.2)
P 		144.3
(-3)
P 		524
B 579.1
(3)
P 		303.9
(-1.7)
P 		385.5
(-0.3)
P 		228.8
(-3)
P 		350
C 596
(3)
P 		484.1
(1.5)
P 		576.1
(2.7)
P 		155.1
(-3)
P 		441
avr 614.5
(3) 		339.1
(-0.8) 		461.7
(0.9) 		176.1
(-3) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 300.8
(-2)
P 		521.5
(3)
P 		256.3
(-3)
P 		286.1
(-2.3)
P 		410.6
(0.5)
P 		363.9
(-0.6)
P 		265
B 625.7
(2)
P 		499.5
(-0.6)
P 		382
(-3)
P 		395.6
(-2.7)
P 		431.7
(-2)
P 		675.5
(3)
P 		294
C 593.4
(3)
P 		444.1
(0.2)
P 		301.5
(-2.4)
P 		269.6
(-3)
P 		313.8
(-2.2)
P 		557.2
(2.3)
P 		324
avr 506.6
(2.3) 		488.4
(1.8) 		313.3
(-3) 		317.1
(-2.9) 		385.4
(-1) 		532.2
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21691
Sequence Type Exemplar sequence
Representative Public ID AU113312 NCBI
Target Description AU113312_rc /REP_DB=TREMBL Accession /GB=AU113312 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk705h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073321 NCBI Caenorhabditis elegans T21C9.12 (T21C9.12) mRNA, complete cds. 11/11 None
T21C9.12 ENSEMBL cdna:known chromosome:CEL140:V:10601689:10604718:1 gene:T21C9.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10604364-10604646(+) 100.0 100.0
Public Domain and Genome References
Gene Title REV protein (anti-repression transactivator protein)
Ensembl T21C9.12
Entrez Gene 179481 Entrez gene
SwissProt Q22647 EMBL-EBI
WormBase CE06481 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260596_AT NLI interacting factor (NIF) family protein at
CANINE:1605651_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
CANINE_2:CFA.17929.1.S1_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
CANINE_2:CFA.17929.1.S1_S_AT similar to translocase of inner mitochondrial membrane 50 homolog cfa
DROSOPHILA_2:1627919_AT dm
DROSGENOME1:153536_AT dm
HG-U133_PLUS_2:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133A_2:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133A:217612_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBA:AA090842_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBA:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBB:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBC:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBD:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HUGENEFL:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HC-G110:HUM_ALU_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HU35KSUBB:RC_H65956_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
U133_X3P:HS.271717.0.A1_3P_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
U133_X3P:HS.233952.2.A1_3P_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133_PLUS_2:224913_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U133B:224913_S_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
HG-U95B:45285_AT translocase of inner mitochondrial membrane 50 homolog (yeast) hs
MOE430A:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430A_2:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430_2:1455456_A_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MG-U74BV2:108489_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MG-U74CV2:168614_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOE430B:1441819_X_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MOUSE430_2:1441819_X_AT translocase of inner mitochondrial membrane 50 homolog (yeast) mm
MU19KSUBA:TC23122_AT RIKEN cDNA 2810403L02 gene, mRNA (cDNA clone MGC:47068 IMAGE:4948744) mm
Protein Similarities
Method ID Description E-Value
blast CAA97339 Hypothetical protein T21C9.12 [Caenorhabditis elegans] ref|NP_505722.1| T21C9.12 [Caenorhabditis elegans] 0.0
blast CAE64858 Hypothetical protein CBG09654 [Caenorhabditis briggsae] 0.0
blast XP_794459 PREDICTED: similar to translocase of inner mitochondrial membrane 50 homolog [Strongylocentrotus purpuratus] 8.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 1.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505722.1 1 168-190
T21C9.12 1 168-190
Sequence
Target Sequence 
>C. ELEGANS:175176_AT
atatgatactctgactctcttttccctgcgcccttttcactctcaatgtgcctttttata
gctcaatttttctaataatataggattgtaggtttatattgttttcttttttagttcttt
ccattcttgtgtttttttaaatttagttcttcccacactagagttgttcagagccggtat
atgacagttgaattctccgtctacacacttctttgttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGATACTCTGACTCTCTTTTCC 127 21 33 Antisense
CCTTTTCACTCTCAATGTGCCTTTT 502 265 64 Antisense
CAATGTGCCTTTTTATAGCTCAATT 221 183 76 Antisense
GATTGTAGGTTTATATTGTTTTCTT 114 433 116 Antisense
TCTTTTTTAGTTCTTTCCATTCTTG 338 615 137 Antisense
TAGTTCTTTCCATTCTTGTGTTTTT 698 653 144 Antisense
AATTTAGTTCTTCCCACACTAGAGT 701 171 172 Antisense
CACTAGAGTTGTTCAGAGCCGGTAT 274 197 188 Antisense
CAGAGCCGGTATATGACAGTTGAAT 420 205 201 Antisense
GACAGTTGAATTCTCCGTCTACACA 259 369 215 Antisense
TCCGTCTACACACTTCTTTGTTGAT 452 595 228 Antisense
Sequence Source Affymetrix Proprietary Database