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[175175_at]

Description AU115840_rc /REP_DB=TREMBL Accession /GB=AU115840 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1278
1 2 3 4 range
A 108.7
(-2.9)
A 		85.1
(-3)
A 		80.6
(-3)
P 		1271.8
(3)
P 		1191
B 98.7
(-2.9)
P 		82.4
(-3)
P 		79.2
(-3)
P 		1323.8
(3)
P 		1245
C 73.8
(-3)
P 		98.2
(-2.9)
P 		71.2
(-3)
P 		1348.8
(3)
P 		1278
avr 93.7
(-2.9) 		88.6
(-2.9) 		77
(-3) 		1314.8
(3) 		1238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 147.1
(-2.4)
P 		122.4
(-3)
P 		227.2
(-0.6)
P 		139.6
(-2.6)
P 		289.5
(0.7)
P 		389.8
(3)
P 		267
B 153.5
(-2.7)
P 		137
(-3)
P 		203.5
(-1.8)
P 		211.1
(-1.6)
P 		288
(-0.2)
P 		456.6
(3)
P 		320
C 132.9
(-2.6)
P 		142.7
(-2.5)
P 		102.2
(-3)
P 		217.2
(-1.4)
P 		222
(-1.4)
P 		547.1
(3)
P 		445
avr 144.5
(-2.8) 		134
(-3) 		177.6
(-2.2) 		189.3
(-2) 		266.5
(-0.6) 		464.5
(3) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 39.6
(-2.2)
A 		18.5
(-3)
A 		21.1
(-2.9)
P 		186.2
(3)
P 		168
B 31.5
(-2.7)
P 		20.3
(-3)
P 		18.4
(-3)
P 		282.1
(3)
P 		264
C 24.4
(-3)
P 		28.2
(-2.9)
P 		24.8
(-3)
P 		227.4
(3)
P 		203
avr 31.8
(-2.7) 		22.3
(-3) 		21.4
(-3) 		231.9
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 27.1
(-3)
P 		43.5
(-1.5)
P 		49.5
(-1)
P 		35.4
(-2.3)
P 		87.4
(2.3)
P 		94.9
(3)
P 		68
B 53.4
(-2.6)
P 		45.6
(-3)
P 		49.4
(-2.8)
P 		55.9
(-2.5)
P 		117
(0.4)
P 		170.3
(3)
P 		125
C 49.3
(-2.1)
P 		43.5
(-2.3)
P 		26
(-3)
P 		43.7
(-2.3)
P 		71.9
(-1.2)
P 		183.1
(3)
P 		157
avr 43.3
(-2.9) 		44.2
(-2.9) 		41.6
(-3) 		45
(-2.8) 		92.1
(-0.2) 		149.4
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21028
Sequence Type Exemplar sequence
Representative Public ID AU115840 NCBI
Target Description AU115840_rc /REP_DB=TREMBL Accession /GB=AU115840 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066431 NCBI Caenorhabditis elegans F10E9.12 (F10E9.12) mRNA, complete cds. 11/11 None
GENEFINDER00000040918 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8323059:8325455:1 11/11 None
SNAP00000040914 ENSEMBL cdna:SNAP chromosome:CEL140:III:8324734:8325459:1 11/11 None
F10E9.12 ENSEMBL cdna:known chromosome:CEL140:III:8324642:8325461:1 gene:F10E9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8325168-8325447(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E9.12
Entrez Gene 176174 Entrez gene
SwissProt Q95QL4 EMBL-EBI
WormBase CE29492 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL08033 Hypothetical protein F10E9.12 [Caenorhabditis elegans] ref|NP_498832.1| F10E9.12 [Caenorhabditis elegans] 7.0E-60
blast AAA28011 Hypothetical protein F10E9.1 [Caenorhabditis elegans] ref|NP_498831.1| F10E9.1 [Caenorhabditis elegans] sp|P34395|YLU1_CAEEL Hypothetical protein F10E9.1 in chromosome III 2.0E-58
blast AAL08033 Hypothetical protein F10E9.12 [Caenorhabditis elegans] ref|NP_498832.1| F10E9.12 [Caenorhabditis elegans] 1.0E-57
blast CAE70162 Hypothetical protein CBG16629 [Caenorhabditis briggsae] 1.0E-39
blast CAE70162 Hypothetical protein CBG16629 [Caenorhabditis briggsae] 2.0E-37
blast CAE56402 Hypothetical protein CBG24092 [Caenorhabditis briggsae] 4.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040918 4 45-67,77-99,133-155,184-206
Sequence
Target Sequence 
>C. ELEGANS:175175_AT
ataagctaccactagaagcagttctacaaaaatccaaagaattcgatgaaatcccaacta
ctccggataatattccatatcttccattaatccaaagatgctctattgacacggactgct
catcggaaaccgcttgttacgatggaaaatgtttaaatgcgaaacgtttccagctattcc
cgtatttattccgaaggtgtgacagtcaattggattgtccttctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGCTACCACTAGAAGCAGTTCT 345 23 31 Antisense
TTCGATGAAATCCCAACTACTCCGG 191 669 72 Antisense
AACTACTCCGGATAATATTCCATAT 417 139 86 Antisense
TATTCCATATCTTCCATTAATCCAA 565 663 101 Antisense
AGATGCTCTATTGACACGGACTGCT 436 67 126 Antisense
ACTGCTCATCGGAAACCGCTTGTTA 452 97 145 Antisense
AAACCGCTTGTTACGATGGAAAATG 488 125 157 Antisense
ATGCGAAACGTTTCCAGCTATTCCC 494 41 187 Antisense
CCAGCTATTCCCGTATTTATTCCGA 188 273 200 Antisense
TTTATTCCGAAGGTGTGACAGTCAA 168 667 215 Antisense
CAGTCAATTGGATTGTCCTTCTGGA 546 207 233 Antisense
Sequence Source Affymetrix Proprietary Database