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[175174_s_at]

Description AV185279_rc /REP_DB=TREMBL Accession /GB=AV185279 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk675h8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 57      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 76      6grp_total > 59      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 1451.6
(3)
P 		1339.8
(-0.2)
P 		1344.3
(-0.1)
P 		1242.7
(-3)
P 		209
B 1577.2
(3)
P 		1392.7
(-0)
P 		1315.8
(-1.3)
P 		1209.5
(-3)
P 		368
C 1403.5
(3)
P 		1403.6
(3)
P 		1274.8
(-1.6)
P 		1235.5
(-3)
P 		168
avr 1477.4
(3) 		1378.7
(0.6) 		1311.6
(-1) 		1229.2
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 1353.2
(3)
P 		1187
(0)
P 		1015.3
(-3)
P 		1025.4
(-2.8)
P 		1303.7
(2.1)
P 		1172.2
(-0.2)
P 		338
B 1285.5
(2.1)
P 		1068.4
(-3)
P 		1194.4
(-0.1)
P 		1325.2
(3)
P 		1169.4
(-0.6)
P 		1240.5
(1)
P 		257
C 1080.7
(-2.8)
P 		1069.7
(-3)
P 		1281.2
(1.5)
P 		1180.5
(-0.7)
P 		1094.2
(-2.5)
P 		1352.9
(3)
P 		283
avr 1239.8
(2.4) 		1108.4
(-3) 		1163.6
(-0.7) 		1177
(-0.2) 		1189.1
(0.3) 		1255.2
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 528.5
(3)
P 		290.8
(-1.1)
P 		351.4
(-0.1)
P 		181.9
(-3)
P 		347
B 503
(3)
P 		344
(-0.9)
P 		304.9
(-1.8)
P 		257.7
(-3)
P 		245
C 464.6
(3)
P 		403.6
(1.6)
P 		444.3
(2.5)
P 		208.3
(-3)
P 		256
avr 498.7
(3) 		346.1
(-0.2) 		366.9
(0.2) 		216
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 249.5
(-2.2)
P 		422.1
(3)
P 		221.1
(-3)
P 		260.1
(-1.8)
P 		393.4
(2.1)
P 		285.4
(-1.1)
P 		201
B 447.3
(2.1)
P 		355.6
(-0.9)
P 		290
(-3)
P 		351
(-1)
P 		475.1
(3)
P 		462.6
(2.6)
P 		185
C 400.6
(1.5)
P 		326.4
(-0.5)
P 		326.1
(-0.5)
P 		237.4
(-3)
P 		354.1
(0.2)
P 		452.9
(3)
P 		216
avr 365.8
(1.1) 		368
(1.2) 		279.1
(-3) 		282.8
(-2.8) 		407.5
(3) 		400.3
(2.7) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175174_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21478
Sequence Type Exemplar sequence
Representative Public ID AV185279 NCBI
Target Description AV185279_rc /REP_DB=TREMBL Accession /GB=AV185279 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk675h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y57G11C.13 ENSEMBL cdna:known chromosome:CEL140:IV:14798111:14799191:1 gene:Y57G11C.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14798837-14799126(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16514 Hypothetical protein Y57G11C.13 [Caenorhabditis elegans] ref|NP_502791.1| Y57G11C.13 [Caenorhabditis elegans] dbj|BAD30093.1| novel small G protein indispensable for equal chromosome segregation [Caenorhabditis elegans] 1.0E-103
blast CAE73905 Hypothetical protein CBG21511 [Caenorhabditis briggsae] 1.0E-102
blast XP_414440 PREDICTED: similar to ADP-ribosylation factor-like 10C [Gallus gallus] 9.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 2.1E-38
Sequence
Target Sequence 
>C. ELEGANS:175174_S_AT
ccctccatattcaactaatctctctcgtctttttcatcacaattgtagtcaatttcccca
acccattcgctcccagttttatttctttggtagctttcactgtgggatgttcatcatccc
cattcaaaagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCCATATTCAACTAATCTCTCT 112 261 93 Antisense
CCATATTCAACTAATCTCTCTCGTC 191 271 97 Antisense
CACAATTGTAGTCAATTTCCCCAAC 337 193 130 Antisense
TTCGCTCCCAGTTTTATTTCTTTGG 256 697 158 Antisense
GCTCCCAGTTTTATTTCTTTGGTAG 467 299 161 Antisense
TTTATTTCTTTGGTAGCTTTCACTG 425 673 170 Antisense
TTCTTTGGTAGCTTTCACTGTGGGA 327 689 175 Antisense
GGTAGCTTTCACTGTGGGATGTTCA 367 505 181 Antisense
GCTTTCACTGTGGGATGTTCATCAT 279 305 185 Antisense
GGATGTTCATCATCCCCATTCAAAA 242 515 197 Antisense
GTTCATCATCCCCATTCAAAAGTTG 68 445 201 Antisense
Sequence Source Affymetrix Proprietary Database