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[175173_s_at]

Description AU113934_rc /REP_DB=TREMBL Accession /GB=AU113934 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk713c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 22      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 430.6
(3)
P 		350.2
(0.6)
P 		226.8
(-3)
P 		427.4
(2.9)
P 		204
B 449.9
(3)
P 		291.7
(-2.9)
P 		289.9
(-3)
P 		424.4
(2)
P 		160
C 404.9
(0)
P 		298.4
(-2.9)
P 		296.5
(-3)
P 		513
(3)
P 		217
avr 428.5
(2.1) 		313.4
(-1.6) 		271.1
(-3) 		454.9
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 399.4
(-2.8)
P 		497.8
(-1.6)
P 		839.9
(2.4)
P 		895
(3)
P 		382
(-3)
P 		378.2
(-3)
P 		517
B 441.2
(-0.6)
P 		533
(1)
P 		645.6
(3)
P 		580
(1.8)
P 		463.5
(-0.2)
P 		307.5
(-3)
P 		338
C 425.5
(-2)
P 		564.2
(-0.3)
P 		734.4
(1.8)
P 		834.3
(3)
P 		520.2
(-0.8)
P 		341.1
(-3)
P 		493
avr 422
(-1.9) 		531.7
(-0.3) 		740
(2.6) 		769.8
(3) 		455.2
(-1.4) 		342.3
(-3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 156.8
(3)
P 		76
(-2)
P 		59.3
(-3)
P 		62.6
(-2.8)
P 		98
B 143.5
(3)
P 		72
(-2.6)
P 		67.2
(-3)
P 		90.4
(-1.2)
P 		76
C 134
(3)
P 		85.8
(-3)
P 		103.3
(-0.8)
P 		86.5
(-2.9)
P 		48
avr 144.8
(3) 		77.9
(-2.9) 		76.6
(-3) 		79.8
(-2.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 73.6
(-3)
P 		177
(1)
P 		182.9
(1.3)
P 		227
(3)
P 		115.3
(-1.4)
P 		92.1
(-2.3)
P 		153
B 153.5
(0.2)
P 		177.4
(2.1)
P 		156.8
(0.4)
P 		153.6
(0.2)
P 		188.3
(3)
P 		114.7
(-3)
P 		74
C 157.7
(0.6)
P 		172.2
(1.8)
P 		186.9
(3)
P 		167.8
(1.4)
P 		168.3
(1.5)
P 		114.2
(-3)
P 		73
avr 128.3
(-1.3) 		175.5
(2.4) 		175.5
(2.4) 		182.8
(3) 		157.3
(1) 		107
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175173_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21450
Sequence Type Exemplar sequence
Representative Public ID AU113934 NCBI
Target Description AU113934_rc /REP_DB=TREMBL Accession /GB=AU113934 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk713c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069805(11), NM_069806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069805 NCBI Caenorhabditis elegans ZK792.1a (ZK792.1) mRNA, complete cds. 11/11 A 
NM_069806 NCBI Caenorhabditis elegans ZK792.1b (ZK792.1) mRNA, complete cds. 11/11 None
SNAP00000011189 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11661190:11665040:1 11/11 None
GENEFINDER00000011197 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11659982:11666005:1 11/11 None
ZK792.1b ENSEMBL cdna:known chromosome:CEL140:IV:11659814:11665164:1 gene:ZK792.1 11/11 None
ZK792.1a ENSEMBL cdna:known chromosome:CEL140:IV:11659883:11667959:1 gene:ZK792.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11664703-11665102(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK792.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92644 Hypothetical protein ZK792.1a [Caenorhabditis elegans] emb|CAA92636.2| Hypothetical protein ZK792.1a [Caenorhabditis elegans] ref|NP_502206.1| ZK792.1a [Caenorhabditis elegans] 0.0
blast CAC42387 Hypothetical protein ZK792.1b [Caenorhabditis elegans] ref|NP_502207.1| ZK792.1b [Caenorhabditis elegans] 0.0
blast CAE62076 Hypothetical protein CBG06099 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 7.1E-11
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502206.1 2 15-34,516-538
NP_502207.1 1 13-32
ZK792.1b 1 13-32
ZK792.1a 2 15-34,516-538
Sequence
Target Sequence 
>C. ELEGANS:175173_S_AT
attcttcgagttcttggtattccttttgtggatccaccacactacacttctagaattgta
tttgaaatctacgagcattcggatgatggcctattcattcgaacactctacaatggaagg
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTCGAGTTCTTGGTATTCCTT 619 9 13 Antisense
GAGTTCTTGGTATTCCTTTTGTGGA 83 397 20 Antisense
GGTATTCCTTTTGTGGATCCACCAC 211 505 28 Antisense
TTGTGGATCCACCACACTACACTTC 300 709 38 Antisense
ATCCACCACACTACACTTCTAGAAT 670 39 44 Antisense
CACCACACTACACTTCTAGAATTGT 117 203 47 Antisense
GTATTTGAAATCTACGAGCATTCGG 6 451 70 Antisense
ATCTACGAGCATTCGGATGATGGCC 148 31 79 Antisense
GATGGCCTATTCATTCGAACACTCT 195 407 97 Antisense
GCCTATTCATTCGAACACTCTACAA 485 281 101 Antisense
TCGAACACTCTACAATGGAAGGAAT 503 597 111 Antisense
Sequence Source Affymetrix Proprietary Database