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[175172_at]

Description AV178627_rc /REP_DB=TREMBL Accession /GB=AV178627 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 56      6grp_total > 29      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1186
1 2 3 4 range
A 2098.6
(-0.6)
P 		1841.3
(-3)
P 		2473.6
(2.8)
P 		2491
(3)
P 		650
B 1899.4
(-2)
P 		1747
(-2.8)
P 		1703.2
(-3)
P 		2845.5
(3)
P 		1142
C 1836.7
(-3)
P 		1978.4
(-2.2)
P 		1873.3
(-2.8)
P 		2889.5
(3)
P 		1053
avr 1944.9
(-2.4) 		1855.6
(-3) 		2016.7
(-1.9) 		2742
(3) 		886

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1434
1 2 3 4 5 6 range
A 2443.4
(1.5)
P 		2151.9
(0.3)
P 		1358.6
(-3)
P 		1846.1
(-1)
P 		2792.4
(3)
P 		2335.3
(1.1)
P 		1434
B 2676
(3)
P 		2406.9
(1.6)
P 		1550.2
(-3)
P 		2007.3
(-0.6)
P 		2129.1
(0.1)
P 		1992.1
(-0.6)
P 		1126
C 2758.8
(3)
P 		2161.1
(0)
P 		1933.2
(-1.1)
P 		2446.7
(1.4)
P 		2272.8
(0.6)
P 		1560.2
(-3)
P 		1199
avr 2626.1
(3) 		2240
(0.7) 		1614
(-3) 		2100
(-0.1) 		2398.1
(1.6) 		1962.5
(-0.9) 		1012
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 764.1
(3)
P 		399.7
(-2.5)
P 		646.6
(1.2)
P 		364.6
(-3)
P 		400
B 605.7
(3)
P 		431.5
(-2)
P 		394.7
(-3)
P 		606.4
(3)
P 		212
C 608
(1.4)
P 		568.8
(-0)
P 		652.9
(3)
P 		487.2
(-3)
P 		166
avr 659.3
(3) 		466.7
(-3) 		564.7
(0.1) 		486.1
(-2.4) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 450.4
(-1.3)
P 		765.3
(2.2)
P 		295.9
(-3)
P 		468.2
(-1.1)
P 		842.6
(3)
P 		568.6
(-0)
P 		547
B 931.1
(3)
P 		801.2
(1.6)
P 		376.4
(-3)
P 		531.7
(-1.3)
P 		865
(2.3)
P 		742.8
(1)
P 		555
C 1022.6
(3)
P 		659.4
(-1.1)
P 		492
(-3)
P 		492
(-3)
P 		735.5
(-0.2)
P 		522.3
(-2.7)
P 		531
avr 801.4
(2.8) 		742
(2) 		388.1
(-3) 		497.3
(-1.5) 		814.4
(3) 		611.2
(0.1) 		426
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20789
Sequence Type Exemplar sequence
Representative Public ID AV178627 NCBI
Target Description AV178627_rc /REP_DB=TREMBL Accession /GB=AV178627 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182237 NCBI Caenorhabditis elegans F55C12.1d (F55C12.1) mRNA, complete cds. 11/11 None
F55C12.1d.2 ENSEMBL cdna:known chromosome:CEL140:II:5884513:5892626:1 gene:F55C12.1 11/11 None
F55C12.1d.1 ENSEMBL cdna:known chromosome:CEL140:II:5884515:5892627:1 gene:F55C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173998 4 1 NM_182237 175172_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5892211-5892555(+) 98.85 98.85
Public Domain and Genome References
Ensembl F55C12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39670 Hypothetical protein F55C12.1d [Caenorhabditis elegans] ref|NP_872037.1| F55C12.1d [Caenorhabditis elegans] 0.0
blast AAK73877 Hypothetical protein F55C12.1b [Caenorhabditis elegans] ref|NP_495175.1| F55C12.1b [Caenorhabditis elegans] 0.0
blast AAC71161 Hypothetical protein F55C12.1a [Caenorhabditis elegans] ref|NP_495176.1| F55C12.1a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175172_AT
ttctggacctttttaccccagtgatacacacatttttttttgtttcaaaacttcaatttg
cccaacgataattttccattcgcaccccattgatgatccatacattttgtgatatatagc
atttttctgcccatcattttttccgacttttcccccctcgaatatttataatttatattc
atgtgtttgtattttccgtctgtcttttctgaaaattcttgtcattttcatggttagtga
tagttcttctcttctttccgtgccgatcaccaatttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGACCTTTTTACCCCAGTGAT 654 689 46 Antisense
TACCCCAGTGATACACACATTTTTT 647 649 59 Antisense
TTTGCCCAACGATAATTTTCCATTC 701 667 102 Antisense
CAACGATAATTTTCCATTCGCACCC 660 187 108 Antisense
GCACCCCATTGATGATCCATACATT 361 315 127 Antisense
ATAGCATTTTTCTGCCCATCATTTT 167 23 161 Antisense
CATGTGTTTGTATTTTCCGTCTGTC 672 209 225 Antisense
TTCCGTCTGTCTTTTCTGAAAATTC 136 699 239 Antisense
ATTCTTGTCATTTTCATGGTTAGTG 676 9 260 Antisense
GTTAGTGATAGTTCTTCTCTTCTTT 444 447 278 Antisense
TTTCCGTGCCGATCACCAATTTTTG 111 669 300 Antisense
Sequence Source Affymetrix Proprietary Database