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[175171_at]

Description AV200106_rc /REP_DB=TREMBL Accession /GB=AV200106 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk556h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1072
1 2 3 4 range
A 1216.6
(3)
P 		581.6
(-0.6)
P 		504.1
(-1)
P 		145
(-3)
P 		1072
B 910.7
(3)
P 		678.6
(1)
P 		534.6
(-0.3)
P 		217.9
(-3)
P 		693
C 1188.3
(3)
P 		556.2
(-0.9)
P 		565
(-0.9)
P 		223
(-3)
P 		965
avr 1105.2
(3) 		605.5
(-0.3) 		534.6
(-0.8) 		195.3
(-3) 		910

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 734
1 2 3 4 5 6 range
A 893.9
(3)
P 		863.8
(2.7)
P 		392.7
(-2)
P 		354
(-2.3)
P 		305.9
(-2.8)
P 		287
(-3)
P 		607
B 933.7
(3)
P 		853.9
(2.3)
P 		504
(-0.5)
P 		392.3
(-1.4)
P 		286.5
(-2.3)
P 		200.2
(-3)
P 		734
C 934.4
(3)
P 		823.3
(2)
P 		622.6
(0.1)
P 		325.4
(-2.7)
P 		295.6
(-2.9)
P 		290.2
(-3)
P 		644
avr 920.7
(3) 		847
(2.3) 		506.4
(-0.8) 		357.2
(-2.1) 		296
(-2.7) 		259.1
(-3) 		662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 443
(3)
P 		126.2
(-1.5)
P 		131.8
(-1.4)
P 		21.2
(-3)
P 		422
B 290.4
(3)
P 		167.6
(-0)
P 		123.9
(-1.1)
P 		46.4
(-3)
P 		244
C 393.4
(3)
P 		159.9
(-0.9)
P 		196.9
(-0.3)
P 		37.6
(-3)
P 		356
avr 375.6
(3) 		151.2
(-1) 		150.9
(-1) 		35.1
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 164.8
(-0.6)
P 		307.2
(3)
P 		85.5
(-2.6)
P 		89.8
(-2.5)
P 		92.3
(-2.4)
P 		69.9
(-3)
P 		237
B 324.9
(3)
P 		284.2
(2)
P 		122.4
(-1.9)
P 		103.9
(-2.3)
P 		116.4
(-2)
P 		74.6
(-3)
P 		250
C 346.3
(3)
P 		251.2
(1)
P 		158.5
(-1)
P 		65.4
(-3)
P 		95.7
(-2.4)
P 		97.2
(-2.3)
P 		281
avr 278.7
(2.9) 		280.9
(3) 		122.1
(-1.8) 		86.4
(-2.8) 		101.5
(-2.4) 		80.6
(-3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21534
Sequence Type Exemplar sequence
Representative Public ID AV200106 NCBI
Target Description AV200106_rc /REP_DB=TREMBL Accession /GB=AV200106 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk556h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067839 NCBI Caenorhabditis elegans Y69A2AR.31 (Y69A2AR.31) mRNA, complete cds. 11/11 A 
GENEFINDER00000018840 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2650489:2663963:-1 9/11 None
Y69A2AR.31 ENSEMBL cdna:known chromosome:CEL140:IV:2650381:2664569:-1 gene:Y69A2AR.31 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018824 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2650479-2651902(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.31
Entrez Gene 177049 Entrez gene
SwissProt Q95XG5 EMBL-EBI
WormBase CE27519 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68577 Hypothetical protein Y69A2AR.31 [Caenorhabditis elegans] ref|NP_500240.1| Y69A2AR.31 [Caenorhabditis elegans] 0.0
blast CAE68242 Hypothetical protein CBG13916 [Caenorhabditis briggsae] 0.0
blast XP_793677 PREDICTED: similar to glial cell line derived neurotrophic factor family receptor alpha 2, partial [Strongylocentrotus purpuratus] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500240.1 1 12-34
Y69A2AR.31 1 12-34
GENEFINDER00000018840 2 1037-1059,1107-1129
Sequence
Target Sequence 
>C. ELEGANS:175171_AT
gtgctgagaagatttgttcaccatatgttcgaaaattggcggatcacttctcgctcaacg
aatcaccacgcttccagttggtattatcaactgttaaacaagttaaagttctcgattatc
tcgacgggttaccacaatcatcaagtggccgacatttcacgggttgtctcctatcaatgt
attatcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTGAGAAGATTTGTTCACCATA 435 479 42 Antisense
GATTTGTTCACCATATGTTCGAAAA 670 427 52 Antisense
AAATTGGCGGATCACTTCTCGCTCA 546 115 74 Antisense
AATCACCACGCTTCCAGTTGGTATT 15 171 102 Antisense
CAAGTTAAAGTTCTCGATTATCTCG 525 183 140 Antisense
CGATTATCTCGACGGGTTACCACAA 133 249 154 Antisense
CGACGGGTTACCACAATCATCAAGT 602 251 163 Antisense
ATCATCAAGTGGCCGACATTTCACG 169 31 178 Antisense
GACATTTCACGGGTTGTCTCCTATC 258 371 192 Antisense
TCACGGGTTGTCTCCTATCAATGTA 508 625 198 Antisense
GTCTCCTATCAATGTATTATCTTCA 389 471 207 Antisense
Sequence Source Affymetrix Proprietary Database