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[175170_s_at]

Description AU113659_rc /REP_DB=TREMBL Accession /GB=AU113659 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 59      6grp_cgc > 60      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10211
1 2 3 4 range
A 4699.2
(-0.3)
P 		8055.3
(1.6)
P 		10358.8
(3)
P 		161.4
(-3)
P 		10197
B 4522.8
(0)
P 		7553.3
(2.1)
P 		8871.1
(3)
P 		155.3
(-3)
P 		8716
C 4833.9
(0.3)
P 		7092.1
(1.9)
P 		8639.3
(3)
P 		147.5
(-3)
P 		8492
avr 4685.3
(-0) 		7566.9
(1.9) 		9289.7
(3) 		154.7
(-3) 		9135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1452
1 2 3 4 5 6 range
A 2194
(3)
P 		1522.1
(0.2)
P 		1547.3
(0.3)
P 		1672.4
(0.8)
P 		1046.6
(-1.8)
P 		758.6
(-3)
P 		1435
B 1980.6
(3)
P 		1441.6
(0.4)
P 		1590.5
(1.1)
P 		1840.1
(2.3)
P 		1004.6
(-1.7)
P 		742.4
(-3)
P 		1238
C 2179.7
(3)
P 		1348.8
(-0.8)
P 		2137.5
(2.8)
P 		1759.1
(1.1)
P 		1054.3
(-2.1)
P 		856.4
(-3)
P 		1323
avr 2118.1
(3) 		1437.5
(-0.1) 		1758.4
(1.4) 		1757.2
(1.4) 		1035.2
(-1.9) 		785.8
(-3) 		1332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2988
1 2 3 4 range
A 1711
(0.8)
P 		1748.6
(0.9)
P 		2708
(3)
P 		23.6
(-3)
P 		2684
B 1442.3
(1.2)
P 		1865.5
(2.4)
P 		2055.6
(3)
P 		33.1
(-3)
P 		2023
C 1600.2
(0.2)
P 		2039
(1)
P 		3011.1
(3)
P 		24.9
(-3)
P 		2986
avr 1584.5
(0.6) 		1884.4
(1.3) 		2591.6
(3) 		27.2
(-3) 		2564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 404.4
(0.7)
P 		541.3
(3)
P 		337
(-0.4)
P 		424.2
(1)
P 		315.8
(-0.8)
P 		184.7
(-3)
P 		357
B 689.1
(3)
P 		479.8
(-0)
P 		386.2
(-1.4)
P 		487.4
(0.1)
P 		408.2
(-1.1)
P 		276.9
(-3)
P 		412
C 807.9
(3)
P 		411.6
(-1.6)
P 		544
(-0)
P 		353.8
(-2.2)
P 		341.2
(-2.4)
P 		286.7
(-3)
P 		521
avr 633.8
(3) 		477.6
(0.6) 		422.4
(-0.3) 		421.8
(-0.3) 		355.1
(-1.4) 		249.4
(-3) 		384
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175170_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21991
Sequence Type Exemplar sequence
Representative Public ID AU113659 NCBI
Target Description AU113659_rc /REP_DB=TREMBL Accession /GB=AU113659 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070792 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-19) (dod-19) mRNA, complete cds. 11/11 None
SNAP00000041443 ENSEMBL cdna:SNAP chromosome:CEL140:V:411743:414455:-1 11/11 None
GENEFINDER00000041445 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:410468:414455:-1 11/11 None
ZK6.10 ENSEMBL cdna:known chromosome:CEL140:V:411621:414588:-1 gene:ZK6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:411752-412374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dod-19
Ensembl ZK6.10
Entrez Gene 178564 Entrez gene
SwissProt O61874 EMBL-EBI
WormBase CE29161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG45576 Downstream of daf-16 (regulated by daf-16) protein 19 [Caenorhabditis elegans] ref|NP_503193.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-19) [Caenorhabditis elegans] 0.0
blast T33206 hypothetical protein ZK6.10 - Caenorhabditis elegans 0.0
blast T33206 hypothetical protein ZK6.10 - Caenorhabditis elegans 1.0E-175
blast AAG45577 Hypothetical protein ZK6.11a [Caenorhabditis elegans] ref|NP_001024314.1| ZK6.11a [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 3.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041445 1 394-416
Sequence
Target Sequence 
>C. ELEGANS:175170_S_AT
aaatatgaacaatcagcgccgccaaatgaattcttgtctgcatggagcattccatatatt
gcaccgatgttcaaagtttcatctacatcgtcaaactcattggctgagcagtactttgtg
caatactttgtagcccaaggagcaatgaatggtggtacaacttcgaaaccgggacagcca
acagtacctcagccgacacttcccggaccaactctaccttacccgacagtacctggacgt
atcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATATGAACAATCAGCGCCGCCAA 162 117 13 Antisense
AGCGCCGCCAAATGAATTCTTGTCT 696 79 27 Antisense
ATTCTTGTCTGCATGGAGCATTCCA 498 11 42 Antisense
GAGCATTCCATATATTGCACCGATG 258 389 57 Antisense
GTTCAAAGTTTCATCTACATCGTCA 569 443 81 Antisense
TCATCTACATCGTCAAACTCATTGG 566 621 91 Antisense
CATTGGCTGAGCAGTACTTTGTGCA 179 217 110 Antisense
TACTTTGTGCAATACTTTGTAGCCC 251 643 124 Antisense
GAATGGTGGTACAACTTCGAAACCG 671 327 159 Antisense
GAAACCGGGACAGCCAACAGTACCT 45 357 177 Antisense
TACCCGACAGTACCTGGACGTATCC 509 649 232 Antisense
Sequence Source Affymetrix Proprietary Database