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[175168_at]

Description AV176209_rc /REP_DB=TREMBL Accession /GB=AV176209 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509f4 : 3prime end, single read.
Cluster 6grp_total > 29      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 239.7
(1.8)
A 		235.2
(1.2)
A 		248.2
(3)
A 		204.2
(-3)
P 		44
B 172.7
(-0)
A 		169.3
(-0.2)
A 		114.4
(-3)
A 		232.5
(3)
P 		118
C 240.6
(0.2)
A 		295.5
(3)
A 		176.3
(-3)
A 		217
(-1)
A 		119
avr 217.7
(1.3) 		233.3
(3) 		179.6
(-3) 		217.9
(1.3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 144.4
(-1.3)
A 		256.1
(3)
M 		174.8
(-0.1)
A 		151.5
(-1)
A 		201.2
(0.9)
A 		100.9
(-3)
P 		155
B 247.9
(2.7)
P 		168.4
(-2.4)
A 		197.5
(-0.5)
A 		159.5
(-3)
A 		165
(-2.6)
A 		252
(3)
P 		93
C 236.5
(3)
P 		113.4
(-3)
A 		232.7
(2.8)
A 		147.6
(-1.3)
A 		222.1
(2.3)
P 		189.2
(0.7)
P 		123
avr 209.6
(3) 		179.3
(-0.2) 		201.7
(2.2) 		152.9
(-3) 		196.1
(1.6) 		180.7
(-0.1) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 87.3
(3)
A 		51.1
(-0.8)
A 		64.9
(0.7)
A 		29.9
(-3)
P 		57
B 55.1
(3)
A 		41.8
(0.2)
A 		26.5
(-3)
A 		49.5
(1.8)
P 		29
C 79.6
(2.3)
A 		85
(3)
A 		61.4
(0.1)
A 		36.6
(-3)
A 		48
avr 74
(3) 		59.3
(0.5) 		50.9
(-0.9) 		38.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 26.6
(-2.8)
A 		91.1
(3)
M 		38.1
(-1.8)
A 		38.4
(-1.8)
A 		60.7
(0.3)
A 		24.6
(-3)
P 		67
B 86.3
(2.1)
P 		56
(-1.4)
A 		48
(-2.3)
A 		42.2
(-3)
A 		67
(-0.1)
A 		94
(3)
P 		52
C 87.7
(3)
P 		34.6
(-2.5)
A 		59.2
(0.1)
A 		29.7
(-3)
A 		71.9
(1.4)
P 		63.3
(0.5)
P 		58
avr 66.9
(3) 		60.6
(1.7) 		48.4
(-0.7) 		36.8
(-3) 		66.5
(2.9) 		60.6
(1.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21133
Sequence Type Exemplar sequence
Representative Public ID AV176209 NCBI
Target Description AV176209_rc /REP_DB=TREMBL Accession /GB=AV176209 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk509f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065440 NCBI Caenorhabditis elegans R74.5a (R74.5) mRNA, complete cds. 11/11 None
R74.5a.2 ENSEMBL cdna:known chromosome:CEL140:III:4197254:4202260:1 gene:R74.5 11/11 None
R74.5a.1 ENSEMBL cdna:known chromosome:CEL140:III:4197256:4202260:1 gene:R74.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175542 2 1 NM_065440 175168_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4201860-4202193(+) 100.0 100.0
Public Domain and Genome References
Ensembl R74.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85276 Hypothetical protein R74.5a [Caenorhabditis elegans] ref|NP_497841.1| R74.5a [Caenorhabditis elegans] 1.0E-130
blast CAD82915 Hypothetical protein R74.5b [Caenorhabditis elegans] ref|NP_871667.1| R74.5b [Caenorhabditis elegans] 9.0E-84
blast CAE72867 Hypothetical protein CBG20166 [Caenorhabditis briggsae] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-19
Sequence
Target Sequence 
>C. ELEGANS:175168_AT
cattgccccatctgacgcatattaattcatgtgtaattttacatattttcccagaacatt
tccagacaaaaaatacattttaatctctattaaaaactctgatgacccccatcccgtccc
caatttggctttatttgatattcataatattctcacggaactctgtgtaataagttgttt
tcttactaatttttctaaccttttgaaattgtatgctacggattgtaattcatcttccct
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGCCCCATCTGACGCATATTAA 391 217 32 Antisense
GCCCCATCTGACGCATATTAATTCA 603 285 36 Antisense
TCTGACGCATATTAATTCATGTGTA 258 609 42 Antisense
GTGTAATTTTACATATTTTCCCAGA 424 471 62 Antisense
ATTAAAAACTCTGATGACCCCCATC 170 11 120 Antisense
GTCCCCAATTTGGCTTTATTTGATA 512 475 147 Antisense
GATATTCATAATATTCTCACGGAAC 411 427 168 Antisense
TATTCTCACGGAACTCTGTGTAATA 554 661 179 Antisense
ACTCTGTGTAATAAGTTGTTTTCTT 59 101 191 Antisense
AACCTTTTGAAATTGTATGCTACGG 382 147 228 Antisense
ACGGATTGTAATTCATCTTCCCTCC 538 95 249 Antisense
Sequence Source Affymetrix Proprietary Database