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[175167_at]

Description AV178503_rc /REP_DB=TREMBL Accession /GB=AV178503 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk567b8 : 3prime end, single read.
Cluster 4grp_high_8_8 > 38      6grp_total > 57      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 21.5
(-3)
P 		53.8
(3)
P 		42
(0.8)
A 		34.5
(-0.6)
P 		32
B 28.1
(-1.3)
A 		21.7
(-3)
A 		44.3
(3)
P 		27.5
(-1.5)
A 		23
C 34.3
(-1)
A 		57.3
(2.3)
P 		20.8
(-3)
M 		61.8
(3)
P 		41
avr 28
(-3) 		44.3
(3) 		35.7
(-0.2) 		41.3
(1.9) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 51
(1)
P 		27.8
(-1.3)
P 		35
(-0.6)
A 		16.9
(-2.3)
A 		10
(-3)
A 		72.1
(3)
P 		62
B 41.1
(-0.3)
P 		27.6
(-1.4)
P 		40.5
(-0.3)
A 		8.8
(-3)
A 		27.5
(-1.4)
A 		79.4
(3)
P 		71
C 40.3
(-0.8)
P 		36.4
(-1.1)
P 		34.7
(-1.3)
A 		13.1
(-3)
A 		26.4
(-1.9)
A 		88.5
(3)
P 		75
avr 44.1
(-0.2) 		30.6
(-1.4) 		36.7
(-0.9) 		12.9
(-3) 		21.3
(-2.2) 		80
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.8
(-0.5)
P 		11.7
(3)
P 		11
(2.4)
A 		5.1
(-3)
P 		7
B 9
(1.4)
A 		5.4
(-3)
A 		10.3
(3)
P 		5.9
(-2.4)
A 		5
C 11.3
(-0.4)
A 		16.5
(3)
P 		7.2
(-3)
M 		10.4
(-0.9)
P 		9
avr 9.4
(0.4) 		11.2
(3) 		9.5
(0.5) 		7.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.4
(-0.4)
P 		9.9
(-0.2)
P 		7.6
(-1.1)
A 		4.3
(-2.5)
A 		3
(-3)
A 		17.6
(3)
P 		15
B 14.3
(-0.4)
P 		9.2
(-1.5)
P 		9.8
(-1.4)
A 		2.3
(-3)
A 		11.2
(-1)
A 		29.6
(3)
P 		27
C 14.9
(-0.3)
P 		11.1
(-1.1)
P 		8.8
(-1.6)
A 		2.6
(-3)
A 		8.6
(-1.7)
A 		29.6
(3)
P 		27
avr 12.9
(-0.4) 		10.1
(-1.1) 		8.7
(-1.5) 		3.1
(-3) 		7.6
(-1.8) 		25.6
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20872
Sequence Type Exemplar sequence
Representative Public ID AV178503 NCBI
Target Description AV178503_rc /REP_DB=TREMBL Accession /GB=AV178503 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk567b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061796 NCBI Caenorhabditis elegans C40A11.6 (C40A11.6) mRNA, complete cds. 11/11 A 
C40A11.6 ENSEMBL cdna:known chromosome:CEL140:II:2144359:2145583:-1 gene:C40A11.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2144367-2144624(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40A11.6
Entrez Gene 173572 Entrez gene
SwissProt Q9TZA8 EMBL-EBI
WormBase CE27840 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 1.0E-118
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 5.0E-85
blast AAB66084 Hypothetical protein B0281.5 [Caenorhabditis elegans] ref|NP_494230.1| B0281.5 [Caenorhabditis elegans] 9.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.3E-43
Sequence
Target Sequence 
>C. ELEGANS:175167_AT
gagaaccatggcctatagatttgacaaacaaattgatactcacccctgaaccactttgga
gctttcgaatttacaatattacgcatccatgttgcgatttttttaaagacttgccttccc
tacagaaaaaaatcggtgatgtattgaacgatgaatgaatatcgaaaagtcttaatccac
acattcaaatttatctctgtgtttactaatgtattccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACCATGGCCTATAGATTTGAC 569 391 18 Antisense
AACAAATTGATACTCACCCCTGAAC 547 133 44 Antisense
CCCCTGAACCACTTTGGAGCTTTCG 289 261 60 Antisense
CCACTTTGGAGCTTTCGAATTTACA 44 271 68 Antisense
GAATTTACAATATTACGCATCCATG 485 325 84 Antisense
GCATCCATGTTGCGATTTTTTTAAA 540 307 100 Antisense
TTTAAAGACTTGCCTTCCCTACAGA 443 671 119 Antisense
TTGCCTTCCCTACAGAAAAAAATCG 14 701 128 Antisense
AAGTCTTAATCCACACATTCAAATT 682 155 184 Antisense
ATTCAAATTTATCTCTGTGTTTACT 139 13 200 Antisense
CTCTGTGTTTACTAATGTATTCCCA 351 231 212 Antisense
Sequence Source Affymetrix Proprietary Database