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[175166_at]

Description AU113165_rc /REP_DB=TREMBL Accession /GB=AU113165 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 24      6grp_total > 31      4grp_total > 04      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7758
1 2 3 4 range
A 3293.7
(-1.7)
P 		1658.8
(-3)
P 		2029.1
(-2.7)
P 		9113.5
(3)
P 		7455
B 3089.2
(-1.5)
P 		2311
(-2.2)
P 		1355.2
(-3)
P 		8188.9
(3)
P 		6834
C 3190.7
(-2)
P 		2084.6
(-3)
P 		2324.7
(-2.8)
P 		8753.8
(3)
P 		6669
avr 3191.2
(-1.9) 		2018.1
(-2.9) 		1903
(-3) 		8685.4
(3) 		6782

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2943
1 2 3 4 5 6 range
A 3000.6
(0.5)
P 		3086.9
(0.7)
P 		4122.7
(3)
P 		2612.3
(-0.4)
P 		2096.9
(-1.5)
P 		1423.7
(-3)
P 		2699
B 3258.7
(0)
P 		4366.2
(3)
P 		4073.6
(2.2)
P 		2858.4
(-1.1)
P 		2822
(-1.2)
P 		2143.4
(-3)
P 		2223
C 2757
(-0.9)
P 		4253.2
(3)
P 		2384.5
(-1.9)
P 		3758.2
(1.7)
P 		1947.6
(-3)
P 		2330.4
(-2)
P 		2306
avr 3005.4
(0.2) 		3902.1
(3) 		3526.9
(1.8) 		3076.3
(0.4) 		2288.8
(-2) 		1965.8
(-3) 		1936
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1431
1 2 3 4 range
A 1199.2
(2.2)
P 		360.1
(-3)
P 		530.4
(-2)
P 		1334
(3)
P 		974
B 985.1
(-0.2)
P 		570.8
(-1.9)
P 		314
(-3)
P 		1745.1
(3)
P 		1431
C 1056.2
(0.1)
P 		599.3
(-3)
P 		810.2
(-1.6)
P 		1476
(3)
P 		877
avr 1080.2
(0.4) 		510.1
(-3) 		551.5
(-2.8) 		1518.4
(3) 		1008

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1107
1 2 3 4 5 6 range
A 553.1
(-1.4)
P 		1097.8
(3)
P 		897.8
(1.4)
P 		662.5
(-0.5)
P 		632.7
(-0.7)
P 		346.6
(-3)
P 		751
B 1133.9
(0.2)
P 		1453.3
(3)
P 		989.2
(-1)
P 		757.1
(-3)
P 		1146.5
(0.4)
P 		799.2
(-2.6)
P 		696
C 1021.9
(0.6)
P 		1297.8
(3)
P 		606.9
(-3)
P 		755.8
(-1.7)
P 		630.2
(-2.8)
P 		780.1
(-1.5)
P 		691
avr 903
(-0.6) 		1283
(3) 		831.3
(-1.2) 		725.1
(-2.2) 		803.1
(-1.5) 		642
(-3) 		641
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22367
Sequence Type Exemplar sequence
Representative Public ID AU113165 NCBI
Target Description AU113165_rc /REP_DB=TREMBL Accession /GB=AU113165 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171804(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171804 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-8) (flp-8) mRNA, complete cds. 11/11 None
F31F6.4b ENSEMBL cdna:known chromosome:CEL140:X:14881414:14882217:1 gene:F31F6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181583 2 1 NM_171804 175166_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14881874-14882207(+) 100.0 100.0
Public Domain and Genome References
Ensembl F31F6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21627 Hypothetical protein F31F6.4b [Caenorhabditis elegans] ref|NP_741934.1| FMRF-Like Peptide family member (flp-8) [Caenorhabditis elegans] 2.0E-70
blast CAA93746 Hypothetical protein F31F6.4a [Caenorhabditis elegans] ref|NP_741935.1| FMRF-Like Peptide family member (flp-8) [Caenorhabditis elegans] gb|AAC08945.1| FMRFamide-like peptide 8 [Caenorhabditis elegans] 1.0E-63
blast CAE63241 Hypothetical protein CBG07605 [Caenorhabditis briggsae] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0068
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0068
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.099
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.57
Sequence
Target Sequence 
>C. ELEGANS:175166_AT
cattcgattcgggtgattcgcgttcagagatggatgtgtgcttcttgatgatttgggcca
aattgtgttctatactgataatgttttgttagatttcttattctccatgctaattttttt
tcttttatctctgcaaaacgtcagttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGATTCGGGTGATTCGCGTTC 97 217 104 Antisense
GATTCGGGTGATTCGCGTTCAGAGA 267 433 109 Antisense
GATTCGCGTTCAGAGATGGATGTGT 373 433 118 Antisense
GATGGATGTGTGCTTCTTGATGATT 542 407 132 Antisense
GTGTGCTTCTTGATGATTTGGGCCA 703 487 139 Antisense
TGGGCCAAATTGTGTTCTATACTGA 174 541 157 Antisense
GTTCTATACTGATAATGTTTTGTTA 10 445 170 Antisense
GTTAGATTTCTTATTCTCCATGCTA 327 447 191 Antisense
TTCTCCATGCTAATTTTTTTTCTTT 499 693 204 Antisense
TTTTTTCTTTTATCTCTGCAAAACG 219 675 219 Antisense
TTATCTCTGCAAAACGTCAGTTAGA 25 679 228 Antisense
Sequence Source Affymetrix Proprietary Database