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[175165_at]

Description AV178634_rc /REP_DB=TREMBL Accession /GB=AV178634 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569e2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 21      6grp_total > 89      4grp_total > 19      6grp_cgc > 79      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 87.2
(-0.7)
P 		91.1
(-0.4)
P 		56.4
(-3)
P 		137.2
(3)
P 		81
B 71.7
(-3)
P 		81.9
(-1.7)
P 		82.4
(-1.7)
P 		120.3
(3)
P 		49
C 92.7
(-1.2)
A 		107
(-0.3)
P 		64.2
(-3)
P 		159.8
(3)
P 		96
avr 83.9
(-1.6) 		93.3
(-0.8) 		67.7
(-3) 		139.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 55.3
(-3)
P 		98.2
(-0.8)
M 		83.2
(-1.5)
P 		63.8
(-2.6)
P 		170.7
(3)
P 		117.9
(0.3)
P 		115
B 57.5
(-2.4)
P 		137.1
(2.3)
P 		47.9
(-3)
P 		60.7
(-2.2)
P 		110.1
(0.7)
P 		148.9
(3)
P 		101
C 113.3
(0.1)
P 		76.2
(-3)
P 		96.6
(-1.3)
P 		148.5
(3)
P 		93.1
(-1.6)
P 		129.8
(1.4)
P 		72
avr 75.4
(-3) 		103.8
(0) 		75.9
(-2.9) 		91
(-1.4) 		124.6
(2.2) 		132.2
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 31.7
(3)
P 		19.8
(-1.2)
P 		14.7
(-3)
P 		20.1
(-1.1)
P 		17
B 22.9
(0.5)
P 		20.2
(-2)
P 		19.1
(-3)
P 		25.6
(3)
P 		7
C 30.7
(2.9)
A 		30.8
(3)
P 		22.4
(-3)
P 		26.9
(0.2)
P 		8
avr 28.4
(3) 		23.6
(0) 		18.7
(-3) 		24.2
(0.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 10.2
(-3)
P 		34.9
(0.6)
M 		18.1
(-1.9)
P 		16.2
(-2.1)
P 		51.5
(3)
P 		28.7
(-0.3)
P 		41
B 20
(-1.9)
P 		45.6
(1.6)
P 		11.6
(-3)
P 		16.1
(-2.4)
P 		44.7
(1.5)
P 		55.5
(3)
P 		44
C 42
(2.6)
P 		23.3
(-3)
P 		24.6
(-2.6)
P 		29.9
(-1)
P 		30.1
(-1)
P 		43.5
(3)
P 		20
avr 24.1
(-1.5) 		34.6
(1) 		18.1
(-3) 		20.7
(-2.4) 		42.1
(2.9) 		42.6
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22250
Sequence Type Exemplar sequence
Representative Public ID AV178634 NCBI
Target Description AV178634_rc /REP_DB=TREMBL Accession /GB=AV178634 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk569e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076566 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-294) (tag-294) mRNA, complete cds. 11/11 None
C54H2.3 ENSEMBL cdna:known chromosome:CEL140:X:5760254:5763334:-1 gene:C54H2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5760315-5760595(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-294
Ensembl C54H2.3
Entrez Gene 180842 Entrez gene
SwissProt Q18861 EMBL-EBI
WormBase CE06985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508967 Temporarily Assigned Gene name family member (tag-294) [Caenorhabditis elegans] gb|AAB00588.1| Hypothetical protein C54H2.3 [Caenorhabditis elegans] 1.0E-171
blast CAE68796 Hypothetical protein CBG14746 [Caenorhabditis briggsae] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175165_AT
ccatctccatccaaacgaaagcacaacaagttgtcatcattagatgttcctttgcataac
tttatttcttacactaactctctctctctcccgctctcgatctttcatcagaaatctgat
ttttgatcggatctctcaaatagttttaaacactgtcaaccacactccaaatgcttcatt
tttgtacagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTCCATCCAAACGAAAGCACA 539 271 63 Antisense
CTCCATCCAAACGAAAGCACAACAA 483 235 67 Antisense
ACAACAAGTTGTCATCATTAGATGT 143 111 85 Antisense
GTTCCTTTGCATAACTTTATTTCTT 392 441 108 Antisense
TTTATTTCTTACACTAACTCTCTCT 496 673 123 Antisense
AATCTGATTTTTGATCGGATCTCTC 358 169 175 Antisense
GATCGGATCTCTCAAATAGTTTTAA 401 415 187 Antisense
GGATCTCTCAAATAGTTTTAAACAC 494 501 191 Antisense
TTTAAACACTGTCAACCACACTCCA 479 671 207 Antisense
AACCACACTCCAAATGCTTCATTTT 636 147 220 Antisense
AATGCTTCATTTTTGTACAGTTTTT 278 165 232 Antisense
Sequence Source Affymetrix Proprietary Database