[Home] | [Total List]

[175164_at]

Description AV178381_rc /REP_DB=TREMBL Accession /GB=AV178381 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk564f8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 46      4grp_high_8_8 > 05      6grp_total > 37      4grp_total > 03      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 117.1
(1.4)
P 		59.6
(-3)
P 		114.2
(1.2)
P 		137.4
(3)
M 		78
B 61.5
(-3)
P 		86.4
(-0.2)
P 		81.2
(-0.8)
P 		114.6
(3)
P 		53
C 88.7
(-1.4)
P 		97.3
(-1)
P 		54.2
(-3)
P 		183.5
(3)
P 		129
avr 89.1
(-2.3) 		81.1
(-3) 		83.2
(-2.8) 		145.2
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 155.5
(3)
M 		86.3
(-1.5)
P 		63.3
(-3)
P 		83.8
(-1.7)
P 		94.6
(-1)
P 		111.2
(0.1)
P 		92
B 93.4
(3)
P 		78.8
(1.1)
P 		85
(1.9)
P 		76.2
(0.7)
A 		47.8
(-3)
P 		84
(1.8)
P 		46
C 74.8
(0.4)
A 		106.2
(3)
P 		62.5
(-0.7)
P 		34.8
(-3)
A 		52.7
(-1.5)
A 		94.6
(2)
P 		71
avr 107.9
(3) 		90.4
(0.6) 		70.3
(-2.2) 		64.9
(-3) 		65
(-3) 		96.6
(1.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 42.6
(3)
P 		12.9
(-3)
P 		29.9
(0.4)
P 		20.1
(-1.5)
M 		30
B 19.6
(-2.1)
P 		21.3
(-0.3)
P 		18.8
(-3)
P 		24.4
(3)
P 		6
C 29.3
(2.2)
P 		28
(1.6)
P 		18.9
(-3)
P 		30.9
(3)
P 		12
avr 30.5
(3) 		20.7
(-3) 		22.5
(-1.9) 		25.1
(-0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 28.7
(2.3)
M 		30.7
(3)
P 		13.8
(-3)
P 		21.3
(-0.3)
P 		28.5
(2.2)
P 		27.1
(1.7)
P 		17
B 32.5
(3)
P 		26.2
(0.1)
P 		20.6
(-2.5)
P 		20.2
(-2.6)
A 		19.4
(-3)
P 		31.3
(2.5)
P 		13
C 27.7
(1.9)
A 		32.4
(3)
P 		15.9
(-0.9)
P 		7
(-3)
A 		17.1
(-0.6)
A 		31.7
(2.8)
P 		25
avr 29.6
(2.8) 		29.8
(2.9) 		16.8
(-2.7) 		16.2
(-3) 		21.7
(-0.6) 		30
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22198
Sequence Type Exemplar sequence
Representative Public ID AV178381 NCBI
Target Description AV178381_rc /REP_DB=TREMBL Accession /GB=AV178381 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk564f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV178381
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV178381 AV178381_rc /REP_DB=TREMBL Accession /GB=AV178381 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk564f8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5208486-5208766(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175164_AT
tcaaggcgaatgatgggaccccacgagttcatccgaagccatcatcttttgagtatttgg
ttgctgcctgttgcgcctgcttgccctttagatgtgtcggactcttgtcactcgatattt
tgttatttaggaccctcggatatattcgtttcatttctcgtctttttctcttcttcttat
tcattttctcaacttcttatcgctcgttttctgtgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGGCGAATGATGGGACCCCACG 104 633 25 Antisense
ATGATGGGACCCCACGAGTTCATCC 37 47 34 Antisense
TTCATCCGAAGCCATCATCTTTTGA 402 689 52 Antisense
TGAGTATTTGGTTGCTGCCTGTTGC 440 567 74 Antisense
CCTGCTTGCCCTTTAGATGTGTCGG 270 267 100 Antisense
TAGATGTGTCGGACTCTTGTCACTC 89 653 113 Antisense
GGACTCTTGTCACTCGATATTTTGT 443 525 123 Antisense
GATATTTTGTTATTTAGGACCCTCG 524 425 138 Antisense
AGGACCCTCGGATATATTCGTTTCA 350 51 153 Antisense
GATATATTCGTTTCATTTCTCGTCT 202 427 163 Antisense
TCTTATCGCTCGTTTTCTGTGTTGC 99 617 219 Antisense
Sequence Source Affymetrix Proprietary Database