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[175162_s_at]

Description AV175769_rc /REP_DB=TREMBL Accession /GB=AV175769 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk463d3 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2.5
(-3)
A 		36.9
(0.2)
A 		4.5
(-2.8)
A 		67.7
(3)
M 		65
B 6.7
(-3)
A 		40.9
(0.1)
A 		14.6
(-2.3)
A 		73.6
(3)
A 		67
C 32.1
(-0.5)
A 		32.4
(-0.4)
A 		9.4
(-3)
A 		63.5
(3)
A 		54
avr 13.8
(-2.6) 		36.7
(-0.2) 		9.5
(-3) 		68.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 51.5
(-2)
P 		38
(-2.4)
A 		23
(-2.8)
A 		13.5
(-3)
A 		16.5
(-2.9)
A 		252.2
(3)
P 		239
B 106.3
(-0.1)
P 		55
(-1.6)
A 		14.6
(-2.8)
A 		6.2
(-3)
A 		35.7
(-2.2)
A 		215.6
(3)
P 		209
C 56.4
(-1.3)
A 		44.7
(-1.7)
A 		6.5
(-3)
A 		5.3
(-3)
A 		31.9
(-2.1)
A 		190.3
(3)
P 		185
avr 71.4
(-1.2) 		45.9
(-1.9) 		14.7
(-2.8) 		8.3
(-3) 		28
(-2.4) 		219.4
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.9
(-3)
A 		8
(1.7)
A 		1.2
(-2.8)
A 		9.9
(3)
M 		9
B 2.1
(-3)
A 		10.1
(0.5)
A 		3.4
(-2.4)
A 		15.7
(3)
A 		14
C 10.6
(2.9)
A 		9.3
(1.9)
A 		3.3
(-3)
A 		10.7
(3)
A 		7
avr 4.5
(-1.8) 		9.1
(1.1) 		2.6
(-3) 		12.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 9.5
(-2.4)
P 		13.5
(-2)
A 		5
(-2.8)
A 		3.4
(-3)
A 		5
(-2.8)
A 		61.4
(3)
P 		58
B 37
(-0.3)
P 		18.3
(-1.7)
A 		3.5
(-2.9)
A 		1.6
(-3)
A 		14.5
(-2)
A 		80.4
(3)
P 		79
C 20.9
(-1.1)
A 		13.7
(-1.8)
A 		1.7
(-2.9)
A 		1.1
(-3)
A 		10.3
(-2.1)
A 		63.7
(3)
P 		63
avr 22.5
(-1.2) 		15.2
(-1.8) 		3.4
(-2.9) 		2
(-3) 		9.9
(-2.3) 		68.5
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175162_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20874
Sequence Type Exemplar sequence
Representative Public ID AV175769 NCBI
Target Description AV175769_rc /REP_DB=TREMBL Accession /GB=AV175769 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk463d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182227 NCBI Caenorhabditis elegans C08F1.10 (C08F1.10) mRNA, complete cds. 11/11 None
SNAP00000012042 ENSEMBL cdna:SNAP chromosome:CEL140:II:1785333:1786268:-1 11/11 None
GENEFINDER00000012057 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1783543:1786010:-1 11/11 None
C08F1.10 ENSEMBL cdna:known chromosome:CEL140:II:1785277:1786280:-1 gene:C08F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1785285-1785625(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F1.10
Entrez Gene 173549 Entrez gene
SwissProt Q8MXJ2 EMBL-EBI
WormBase CE31770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 1.0E-161
blast T32338 hypothetical protein C08F1.5 - Caenorhabditis elegans 1.0E-106
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 1.0E-106
blast AAY55851 Hypothetical protein C08F1.11 [Caenorhabditis elegans] ref|NP_001021937.1| C08F1.11 [Caenorhabditis elegans] 4.0E-82
blast AAY55851 Hypothetical protein C08F1.11 [Caenorhabditis elegans] ref|NP_001021937.1| C08F1.11 [Caenorhabditis elegans] 8.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872027.1 6 27-49,69-91,112-134,138-160,181-200,215-237
C08F1.10 6 27-49,69-91,112-134,138-160,181-200,215-237
SNAP00000012042 6 27-49,69-91,112-134,138-160,181-200,215-237
GENEFINDER00000012057 6 26-48,52-74,95-114,129-151,247-266,281-303
Sequence
Target Sequence 
>C. ELEGANS:175162_S_AT
gcttctttcattggcatcagctttattaacctggatcaattcacggatgagtatgttgga
cttgcattttactatacaactcgatatttctgtcctgctatcaatatcatcgcgatccca
atgatctacgtagccttcttggcctataactccgaagaatttgcattcagtgggaaggaa
ccgactagtggaagattttggtatggagtgtgcaggtggaatgaaaaattgggagaatgg
gagcatgtggagacgattcctgagaaacccgagtcgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTTTCATTGGCATCAGCTTTA 671 305 13 Antisense
GGCATCAGCTTTATTAACCTGGATC 259 535 25 Antisense
GGATGAGTATGTTGGACTTGCATTT 568 513 57 Antisense
TACAACTCGATATTTCTGTCCTGCT 242 643 87 Antisense
CTGTCCTGCTATCAATATCATCGCG 603 237 102 Antisense
TATCAATATCATCGCGATCCCAATG 148 661 111 Antisense
GATCCCAATGATCTACGTAGCCTTC 698 415 126 Antisense
CTACGTAGCCTTCTTGGCCTATAAC 633 223 138 Antisense
GGCCTATAACTCCGAAGAATTTGCA 536 543 153 Antisense
GGGAGCATGTGGAGACGATTCCTGA 127 495 251 Antisense
ATTCCTGAGAAACCCGAGTCGCTGG 161 9 268 Antisense
Sequence Source Affymetrix Proprietary Database