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[175160_at]

Description AU113027_rc /REP_DB=TREMBL Accession /GB=AU113027 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 447.2
(-3)
P 		501.3
(-1.3)
P 		472.6
(-2.2)
P 		641.1
(3)
P 		194
B 508.8
(-1.5)
P 		499.6
(-2)
P 		477.7
(-3)
P 		606.2
(3)
P 		129
C 473.7
(-3)
P 		478
(-2.9)
P 		583.5
(0.2)
P 		680.1
(3)
P 		206
avr 476.6
(-3) 		493
(-2.4) 		511.3
(-1.7) 		642.5
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 432.8
(-2.7)
P 		420.5
(-3)
P 		649.9
(3)
P 		466.2
(-1.8)
P 		511.7
(-0.6)
P 		514
(-0.6)
P 		229
B 408.5
(-3)
P 		608.8
(0.4)
P 		613.2
(0.4)
P 		601.3
(0.2)
P 		548.2
(-0.7)
P 		766.9
(3)
P 		358
C 310.9
(-3)
P 		661.2
(1.3)
P 		471.5
(-1)
P 		629.2
(0.9)
P 		358.8
(-2.4)
P 		802.1
(3)
P 		491
avr 384.1
(-3) 		563.5
(0.5) 		578.2
(0.8) 		565.6
(0.5) 		472.9
(-1.3) 		694.3
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 162.8
(3)
P 		108.8
(-1.7)
P 		123.6
(-0.4)
P 		93.8
(-3)
P 		69
B 162.2
(3)
P 		123.4
(-1.5)
P 		110.7
(-3)
P 		129.2
(-0.8)
P 		52
C 156.8
(-0.2)
P 		137.4
(-1.5)
P 		203.4
(3)
P 		114.7
(-3)
P 		89
avr 160.6
(3) 		123.2
(-1.7) 		145.9
(1.2) 		112.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 79.8
(-3)
P 		149.5
(2.6)
P 		141.5
(2)
P 		118.2
(0.1)
P 		154.4
(3)
P 		125.2
(0.7)
P 		75
B 142.1
(-3)
P 		202.6
(-0.5)
P 		148.9
(-2.7)
P 		159.3
(-2.3)
P 		222.7
(0.4)
P 		286
(3)
P 		144
C 115.2
(-3)
P 		201.8
(0.4)
P 		120
(-2.8)
P 		126.5
(-2.6)
P 		116.1
(-3)
P 		268.5
(3)
P 		153
avr 112.4
(-3) 		184.6
(0.8) 		136.8
(-1.7) 		134.7
(-1.8) 		164.4
(-0.3) 		226.6
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21899
Sequence Type Exemplar sequence
Representative Public ID AU113027 NCBI
Target Description AU113027_rc /REP_DB=TREMBL Accession /GB=AU113027 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073688 NCBI Caenorhabditis elegans R04F11.5 (R04F11.5) mRNA, complete cds. 11/11 None
SNAP00000007839 ENSEMBL cdna:SNAP chromosome:CEL140:V:12319962:12320607:-1 11/11 None
GENEFINDER00000007849 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12319962:12320607:-1 11/11 None
R04F11.5 ENSEMBL cdna:known chromosome:CEL140:V:12319930:12320607:-1 gene:R04F11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12319939-12320219(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04F11.5
Entrez Gene 179689 Entrez gene
SwissProt Q8WQD7 EMBL-EBI
WormBase CE29599 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD01086 Hypothetical protein R04F11.5 [Caenorhabditis elegans] ref|NP_506089.1| R04F11.5 [Caenorhabditis elegans] 1.0E-106
blast CAE75456 Hypothetical protein CBG23451 [Caenorhabditis briggsae] 7.0E-88
blast NP_001018397 hypothetical protein LOC553583 [Danio rerio] emb|CAI20829.1| novel protein [Danio rerio] gb|AAH95154.1| Hypothetical protein LOC553583 [Danio rerio] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:175160_AT
agccaaaatcgattgcattattacaatctctggttcttttcgctcttggttgctagcgat
tacaacgataaacttagaatatattcttcacaagattcaaatctaaaagattggccatgg
acagagttgtggaggaacattgttgacattggagctctcggtagatggcatcgtatggaa
acagcatttgttgattatgatgttaatactgacgagattgatttgctgcctgatggcgac
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCAAAATCGATTGCATTATTACA 621 83 22 Antisense
TATTACAATCTCTGGTTCTTTTCGC 180 663 40 Antisense
TTCTTTTCGCTCTTGGTTGCTAGCG 511 689 55 Antisense
GCTCTTGGTTGCTAGCGATTACAAC 120 301 63 Antisense
AAGATTGGCCATGGACAGAGTTGTG 93 157 128 Antisense
GAGTTGTGGAGGAACATTGTTGACA 515 395 145 Antisense
CATTGTTGACATTGGAGCTCTCGGT 660 217 159 Antisense
GGAGCTCTCGGTAGATGGCATCGTA 119 521 172 Antisense
GATGGCATCGTATGGAAACAGCATT 16 407 185 Antisense
TGACGAGATTGATTTGCTGCCTGAT 335 569 231 Antisense
ATTGATTTGCTGCCTGATGGCGACA 229 5 238 Antisense
Sequence Source Affymetrix Proprietary Database