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[175158_s_at]

Description AU116471_rc /REP_DB=TREMBL Accession /GB=AU116471 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 62      6grp_total > 81      4grp_total > 03      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2316
1 2 3 4 range
A 659.5
(-1.6)
P 		555.2
(-2)
P 		244.9
(-3)
P 		2083.2
(3)
P 		1838
B 637.5
(-2.2)
P 		386.5
(-2.9)
P 		362.7
(-3)
P 		2561
(3)
P 		2198
C 672.9
(-2)
P 		546.7
(-2.4)
P 		387.6
(-3)
P 		2116.1
(3)
P 		1729
avr 656.6
(-2) 		496.1
(-2.5) 		331.7
(-3) 		2253.4
(3) 		1922

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 400
(-1.1)
P 		521.7
(1.5)
P 		520.8
(1.5)
P 		593.9
(3)
P 		521.4
(1.5)
P 		308.5
(-3)
P 		285
B 334.9
(-2.8)
P 		463.4
(0.2)
P 		338.6
(-2.7)
P 		548.4
(2.1)
P 		588.1
(3)
P 		324.4
(-3)
P 		264
C 426.9
(-2.8)
P 		421.9
(-2.9)
P 		494.8
(-2)
P 		901.5
(3)
P 		529.2
(-1.6)
P 		411
(-3)
P 		491
avr 387.3
(-2.3) 		469
(-0.8) 		451.4
(-1.1) 		681.3
(3) 		546.2
(0.6) 		348
(-3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 482
1 2 3 4 range
A 240.1
(1.4)
P 		120.5
(-1.6)
P 		64
(-3)
P 		304.9
(3)
P 		241
B 203.3
(-1.4)
P 		95.5
(-2.9)
P 		84
(-3)
P 		545.7
(3)
P 		462
C 222.8
(-0.6)
P 		157.2
(-2.4)
P 		135.1
(-3)
P 		356.8
(3)
P 		222
avr 222.1
(-0.5) 		124.4
(-2.4) 		94.4
(-3) 		402.5
(3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 73.7
(-3)
P 		185.6
(3)
P 		113.4
(-0.9)
P 		150.6
(1.1)
P 		157.3
(1.5)
P 		75.1
(-2.9)
P 		112
B 116.5
(-1.7)
P 		154.3
(-0.2)
P 		82.2
(-3)
P 		145.3
(-0.6)
P 		238.9
(3)
P 		121
(-1.5)
P 		157
C 158.2
(0.5)
P 		128.7
(-2.7)
P 		125.9
(-3)
P 		181.3
(3)
P 		171.2
(1.9)
P 		137.6
(-1.7)
P 		55
avr 116.1
(-2.3) 		156.2
(0.6) 		107.2
(-3) 		159.1
(0.8) 		189.1
(3) 		111.2
(-2.7) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175158_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21388
Sequence Type Exemplar sequence
Representative Public ID AU116471 NCBI
Target Description AU116471_rc /REP_DB=TREMBL Accession /GB=AU116471 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069825 NCBI Caenorhabditis elegans T12A7.6 (T12A7.6) mRNA, complete cds. 11/11 None
SNAP00000004569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11749211:11750941:1 11/11 None
GENEFINDER00000004584 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11749211:11750941:1 11/11 None
T12A7.6 ENSEMBL cdna:known chromosome:CEL140:IV:11749190:11750978:1 gene:T12A7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11750650-11750974(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A7.6
Entrez Gene 178109 Entrez gene
SwissProt Q95ZP0 EMBL-EBI
WormBase CE27446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42338 Hypothetical protein T12A7.6 [Caenorhabditis elegans] ref|NP_502226.1| T12A7.6 [Caenorhabditis elegans] 0.0
blast CAE62120 Hypothetical protein CBG06160 [Caenorhabditis briggsae] 1.0E-175
blast CAC42338 Hypothetical protein T12A7.6 [Caenorhabditis elegans] ref|NP_502226.1| T12A7.6 [Caenorhabditis elegans] 1.0E-169
blast CAE62120 Hypothetical protein CBG06160 [Caenorhabditis briggsae] 1.0E-143
Sequence
Target Sequence 
>C. ELEGANS:175158_S_AT
gagtttctactcaagcatacgtgtccaacacttcgatcccgtttggtgaaacatgaacat
ttcagattgctctgtgacgcattccgatataacgaacaagagattttctcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTCTACTCAAGCATACGTGTC 342 399 17 Antisense
TACTCAAGCATACGTGTCCAACACT 509 645 24 Antisense
GCATACGTGTCCAACACTTCGATCC 57 309 31 Antisense
CACTTCGATCCCGTTTGGTGAAACA 92 197 45 Antisense
GATCCCGTTTGGTGAAACATGAACA 447 415 51 Antisense
AAACATGAACATTTCAGATTGCTCT 58 125 65 Antisense
CAGATTGCTCTGTGACGCATTCCGA 554 205 79 Antisense
ATTGCTCTGTGACGCATTCCGATAT 182 7 82 Antisense
GCTCTGTGACGCATTCCGATATAAC 286 299 85 Antisense
GACGCATTCCGATATAACGAACAAG 14 381 92 Antisense
TAACGAACAAGAGATTTTCTCACTT 91 639 106 Antisense
Sequence Source Affymetrix Proprietary Database