[Home] | [Total List]

[175157_s_at]

Description AV177947_rc /REP_DB=TREMBL Accession /GB=AV177947 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536a1 : 3prime end, single read.
Cluster 6grp_total > 46      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 39.5
(1.9)
P 		35
(1.3)
A 		4.6
(-3)
A 		47.5
(3)
A 		43
B 40
(2.6)
A 		34.8
(0.2)
A 		28.1
(-3)
A 		40.8
(3)
M 		13
C 36.3
(-2)
P 		24.3
(-3)
A 		24.1
(-3)
A 		100.9
(3)
P 		77
avr 38.6
(-0.3) 		31.4
(-1.3) 		18.9
(-3) 		63.1
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 49
(2.4)
A 		29.6
(-0.1)
A 		43.4
(1.7)
P 		7.5
(-3)
A 		23.3
(-1)
A 		53.8
(3)
P 		46
B 61.7
(2.8)
P 		35.1
(0)
A 		28.3
(-0.7)
A 		6.4
(-3)
A 		23.9
(-1.2)
A 		63.6
(3)
P 		57
C 37.9
(-1.3)
P 		70.3
(3)
P 		46.7
(-0.1)
A 		39.5
(-1)
A 		24.6
(-3)
P 		50.6
(0.4)
P 		46
avr 49.5
(2) 		45
(1.3) 		39.5
(0.4) 		17.8
(-3) 		23.9
(-2) 		56
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.4
(3)
P 		7.6
(-0.1)
A 		1.2
(-3)
A 		7
(-0.4)
A 		13
B 12.8
(3)
A 		8.6
(-1)
A 		6.5
(-3)
A 		8.7
(-0.9)
M 		6
C 12
(0)
P 		7
(-3)
A 		8.4
(-2.2)
A 		17
(3)
P 		10
avr 13.1
(3) 		7.7
(-1.2) 		5.4
(-3) 		10.9
(1.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9
(0.8)
A 		10.5
(1.6)
A 		9.4
(1)
P 		1.9
(-3)
A 		7
(-0.3)
A 		13.1
(3)
P 		11
B 21.5
(2.4)
P 		11.7
(-0.3)
A 		6.9
(-1.6)
A 		1.7
(-3)
A 		9.7
(-0.8)
A 		23.7
(3)
P 		22
C 14
(-0.3)
P 		21.4
(3)
P 		11.9
(-1.2)
A 		7.9
(-3)
A 		8
(-3)
P 		16.9
(1)
P 		14
avr 14.8
(1.7) 		14.5
(1.6) 		9.4
(-0.6) 		3.8
(-3) 		8.2
(-1.1) 		17.9
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175157_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22016
Sequence Type Exemplar sequence
Representative Public ID AV177947 NCBI
Target Description AV177947_rc /REP_DB=TREMBL Accession /GB=AV177947 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk536a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028589(11), NM_070758(11), NM_070759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028589 NCBI Caenorhabditis elegans DC2.7c (DC2.7) mRNA, complete cds. 11/11 None
NM_070758 NCBI Caenorhabditis elegans DC2.7a (DC2.7) mRNA, complete cds. 11/11 A 
NM_070759 NCBI Caenorhabditis elegans DC2.7b (DC2.7) mRNA, complete cds. 11/11 None
GENEFINDER00000026554 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:228489:234497:-1 11/11 None
DC2.7a ENSEMBL cdna:known chromosome:CEL140:V:228760:234497:-1 gene:DC2.7 11/11 A 
DC2.7b ENSEMBL cdna:known chromosome:CEL140:V:232705:234497:-1 gene:DC2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:232714-233105(-) 100.0 100.0
Public Domain and Genome References
Ensembl DC2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023760 DC2.7c [Caenorhabditis elegans] gb|AAX55694.1| Hypothetical protein DC2.7c [Caenorhabditis elegans] 0.0
blast NP_503159 DC2.7a [Caenorhabditis elegans] gb|AAD14728.2| Hypothetical protein DC2.7a [Caenorhabditis elegans] 0.0
blast NP_503160 DC2.7b [Caenorhabditis elegans] gb|AAK68289.1| Hypothetical protein DC2.7b [Caenorhabditis elegans] 1.0E-176
blast NP_503160 DC2.7b [Caenorhabditis elegans] gb|AAK68289.1| Hypothetical protein DC2.7b [Caenorhabditis elegans] 1.0E-173
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-59
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-62
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-37
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 5.0E-37
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-14
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-8
hanks 2.3.1 CaMK Group; CaMK Other; MAPKAP2 2.0E-51
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 6.0E-61
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 3.0E-62
hanks 1.4.7 AGC group; AGC IV GPCR kinases; DmGPRK1 4.0E-59
hanks 1.4.2 AGC group; AGC IV GPCR kinases; bARK2 4.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-59
Pfam IPR000719 EMBL-EBI Protein kinase 5.5E-70
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-70
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-71
Sequence
Target Sequence 
>C. ELEGANS:175157_S_AT
cgccgcctggatcgacaaaaagttccgaacggacaacttatggaatgacatttccgaccg
ggctcttgcactcctccgcaaaattctttgcgtcaatgtcagtgagagagttagtattga
gcaaatcgaggcggatccatggttcacatttgactacgcaaaaaggatcgcaagtcaaaa
gcctagtgcaagatcatgctacattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGCCTGGATCGACAAAAAGTTC 568 255 13 Antisense
CCGAACGGACAACTTATGGAATGAC 710 259 37 Antisense
ATGGAATGACATTTCCGACCGGGCT 249 53 52 Antisense
TGCACTCCTCCGCAAAATTCTTTGC 672 575 79 Antisense
AAATTCTTTGCGTCAATGTCAGTGA 258 115 93 Antisense
GTATTGAGCAAATCGAGGCGGATCC 5 453 126 Antisense
ATCGAGGCGGATCCATGGTTCACAT 150 35 137 Antisense
TCCATGGTTCACATTTGACTACGCA 84 591 148 Antisense
TTGACTACGCAAAAAGGATCGCAAG 187 703 162 Antisense
GGATCGCAAGTCAAAAGCCTAGTGC 207 513 177 Antisense
TAGTGCAAGATCATGCTACATTCCA 223 655 196 Antisense
Sequence Source Affymetrix Proprietary Database