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[175156_at]

Description AV180660_rc /REP_DB=TREMBL Accession /GB=AV180660 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 72      6grp_total > 92      4grp_total > 12      6grp_highest_sub > 05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1014
1 2 3 4 range
A 554.8
(-0.4)
P 		453
(-1.7)
P 		353.6
(-3)
P 		813.1
(3)
P 		460
B 619.7
(-1.1)
P 		357.6
(-2.6)
P 		298.2
(-3)
P 		1305.2
(3)
P 		1007
C 508.9
(-1.1)
P 		457.6
(-1.6)
P 		291.6
(-3)
P 		979.4
(3)
P 		688
avr 561.1
(-0.9) 		422.7
(-2.1) 		314.5
(-3) 		1032.6
(3) 		718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 382.5
(-2)
P 		397.2
(-1.7)
P 		331.4
(-2.8)
P 		376.3
(-2.1)
P 		682.1
(3)
P 		320
(-3)
P 		362
B 453.1
(-1.1)
P 		360
(-3)
P 		402.6
(-2.1)
P 		606
(2.1)
P 		651.6
(3)
P 		395.8
(-2.3)
P 		292
C 433
(0)
P 		423.1
(-0.2)
P 		268.5
(-3)
P 		576.8
(2.7)
P 		595.3
(3)
P 		354.1
(-1.4)
P 		327
avr 422.9
(-1.3) 		393.4
(-1.8) 		334.2
(-3) 		519.7
(0.6) 		643
(3) 		356.6
(-2.6) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 202
(3)
P 		98.3
(-2.7)
P 		92.4
(-3)
P 		119
(-1.5)
P 		110
B 197.6
(0.7)
P 		88.3
(-2.4)
P 		69.1
(-3)
P 		278.1
(3)
P 		209
C 168.5
(3)
P 		131.6
(-0.3)
P 		101.6
(-3)
P 		165.2
(2.7)
P 		67
avr 189.4
(3) 		106.1
(-1.9) 		87.7
(-3) 		187.4
(2.9) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 70.5
(-3)
P 		141.3
(0.1)
P 		72.2
(-2.9)
P 		95.4
(-1.9)
P 		205.8
(3)
P 		77.9
(-2.7)
P 		135
B 157.7
(-0.8)
P 		119.8
(-2.2)
P 		97.8
(-3)
P 		160.5
(-0.7)
P 		264.7
(3)
P 		147.6
(-1.2)
P 		167
C 160.5
(1.5)
P 		129.1
(-0.1)
P 		68.3
(-3)
P 		116
(-0.7)
P 		192.6
(3)
P 		118.5
(-0.6)
P 		124
avr 129.6
(-0.9) 		130.1
(-0.9) 		79.4
(-3) 		124
(-1.1) 		221
(3) 		114.7
(-1.5) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21010
Sequence Type Exemplar sequence
Representative Public ID AV180660 NCBI
Target Description AV180660_rc /REP_DB=TREMBL Accession /GB=AV180660 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F37A8.5 ENSEMBL cdna:known chromosome:CEL140:III:3956599:3958066:1 gene:F37A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3957776-3958056(+) 100.0 100.0
Public Domain and Genome References
Ensembl F37A8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54236 Hypothetical protein F37A8.5 [Caenorhabditis elegans] ref|NP_497796.1| F37A8.5 [Caenorhabditis elegans] sp|Q9U3G6|YPL1_CAEEL Yippee-like protein F37A8.5 2.0E-78
blast XP_690346 PREDICTED: similar to Yippee-like protein 1 (DiGeorge syndrome-related protein FKSG3) [Danio rerio] 5.0E-55
blast NP_001005341 yippee-like 2 [Mus musculus] ref|NP_001005404.1| yippee-like 2 [Homo sapiens] ref|XP_852552.1| PREDICTED: similar to yippee-like 2 [Canis familiaris] emb|CAI24350.1| ortholog of human yippee-like 2 (Drosophila) YPEL2 [Mus musculus] emb|CAG32636.1| hypothetical protein [Gallus gallus] emb|CAH90118.1| hypothetical protein [Pongo pygmaeus] ref|NP_001007848.1| yippee-like 2 [Gallus gallus] gb|AAH97746.1| Unknown (protein for MGC:115434) [Xenopus laevis] gb|AAL09354.1| DiGeorge syndrome-related protein FKSG4 [Homo sapiens] dbj|BAD51382.1| yippee-like 2 [Mus musculus] dbj|BAD51387.1| yippee-like 2 [Cercopithecus aethiops] dbj|BAD51377.1| yippee-like 2 [Homo sapiens] sp|Q65Z58|YPEL2_CERAE Yippee-like protein 2 sp|Q65Z95|YPEL2_MOUSE Yippee-like protein 2 sp|Q96QA6|YPEL2_HUMAN Yippee-like protein 2 sp|Q5RDN9|YPEL2_PONPY Yippee-like protein 9.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR004910 EMBL-EBI Yippee-like protein 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:175156_AT
cactcacatctctgctgaacgattttgggtcttgaaacaagagatcccaaaaaattgatc
aatccaaactgcagatatacacatttcatctactttttccctatttgtctccattcacta
taggtacttttcccccccccattgacggtttcaattttccaatttttctattatcctcct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCACATCTCTGCTGAACGATTT 560 195 69 Antisense
CTCTGCTGAACGATTTTGGGTCTTG 369 231 78 Antisense
GGGTCTTGAAACAAGAGATCCCAAA 534 497 95 Antisense
AAATTGATCAATCCAAACTGCAGAT 575 115 120 Antisense
TCCAAACTGCAGATATACACATTTC 6 589 131 Antisense
ATACACATTTCATCTACTTTTTCCC 367 23 145 Antisense
CCCTATTTGTCTCCATTCACTATAG 174 259 167 Antisense
GTCTCCATTCACTATAGGTACTTTT 143 453 175 Antisense
TCCATTCACTATAGGTACTTTTCCC 308 591 178 Antisense
CCATTGACGGTTTCAATTTTCCAAT 563 269 207 Antisense
TTCCAATTTTTCTATTATCCTCCTC 696 699 225 Antisense
Sequence Source Affymetrix Proprietary Database