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[175155_at] cell division control protein

Description AV178437_rc /REP_DB=TREMBL Accession /GB=AV178437 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 41      6grp_total > 17      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 1080.5
(3)
P 		700.9
(-1.1)
P 		914.7
(1.2)
P 		526.7
(-3)
P 		554
B 879.6
(2.1)
P 		857.7
(1.8)
P 		959
(3)
P 		446.6
(-3)
P 		512
C 1016.7
(1.2)
P 		915.8
(0.3)
P 		1237.3
(3)
P 		516.6
(-3)
P 		721
avr 992.3
(2.5) 		824.8
(0.6) 		1037
(3) 		496.6
(-3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 870.6
(3)
P 		687.3
(-0.8)
P 		731.3
(0.1)
P 		615.6
(-2.3)
P 		697.6
(-0.6)
P 		583.6
(-3)
P 		287
B 1106.4
(3)
P 		951.5
(1)
P 		640.4
(-3)
P 		706.2
(-2.2)
P 		679.3
(-2.5)
P 		857.9
(-0.2)
P 		466
C 746.8
(1.9)
P 		796.6
(3)
P 		651
(-0.1)
P 		744.8
(1.9)
P 		512.9
(-3)
P 		593.9
(-1.3)
P 		284
avr 907.9
(3) 		811.8
(0.9) 		674.2
(-2) 		688.9
(-1.7) 		629.9
(-3) 		678.5
(-2) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 393.4
(3)
P 		152.1
(-1.6)
P 		239.1
(0.1)
P 		77.1
(-3)
P 		316
B 280.5
(3)
P 		211.8
(0.8)
P 		222.2
(1.1)
P 		95.2
(-3)
P 		185
C 336.6
(1.3)
P 		263.3
(0.1)
P 		431.3
(3)
P 		87.1
(-3)
P 		344
avr 336.8
(3) 		209.1
(-0.1) 		297.5
(2.1) 		86.5
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 160.5
(-1.9)
P 		244.4
(3)
P 		159.3
(-2)
P 		156.1
(-2.2)
P 		210.5
(1)
P 		142.1
(-3)
P 		102
B 385
(3)
P 		316.7
(1.2)
P 		155.5
(-3)
P 		187
(-2.2)
P 		276
(0.2)
P 		319.9
(1.3)
P 		230
C 276.8
(3)
P 		243.1
(1.4)
P 		165.7
(-2.2)
P 		149.8
(-3)
P 		166
(-2.2)
P 		198.8
(-0.7)
P 		127
avr 274.1
(3) 		268.1
(2.7) 		160.2
(-3) 		164.3
(-2.8) 		217.5
(0) 		220.3
(0.2) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21127
Sequence Type Exemplar sequence
Representative Public ID AV178437 NCBI
Target Description AV178437_rc /REP_DB=TREMBL Accession /GB=AV178437 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk566b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065737 NCBI Caenorhabditis elegans F52C9.3 (F52C9.3) mRNA, complete cds. 11/11 None
SNAP00000014753 ENSEMBL cdna:SNAP chromosome:CEL140:III:5321849:5326189:1 11/11 None
GENEFINDER00000014764 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5321849:5326189:1 11/11 None
F52C9.3 ENSEMBL cdna:known chromosome:CEL140:III:5321846:5326228:1 gene:F52C9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5325307-5326217(+) 100.0 100.0
Public Domain and Genome References
Gene Title cell division control protein
Ensembl F52C9.3
Entrez Gene 175732 Entrez gene
SwissProt Q10123 EMBL-EBI
WormBase CE29806 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7205 protein kinase C activation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4143 diacylglycerol kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81060 Hypothetical protein F52C9.3 [Caenorhabditis elegans] ref|NP_498138.2| F52C9.3 [Caenorhabditis elegans] sp|Q10123|YSM3_CAEEL Hypothetical protein F52C9.3 in chromosome III 0.0
blast T16422 hypothetical protein F52C9.3 - Caenorhabditis elegans 0.0
blast AAH45347 Multiple substrate lipid kinase [Danio rerio] ref|NP_956174.1| multiple substrate lipid kinase [Danio rerio] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:175155_AT
gttttatggaactgatttcttggcaaattctgttgcttttaagatttctgctctaccgtc
ctacattcatcgcctctacatctcaagtaacgctacaccaaaagatgctgaactcacgga
tagacaaatcacaattcgtggaactcagaagaaattggacattttcctgccaacatccat
tcgcctggaacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTATGGAACTGATTTCTTGGCA 234 449 68 Antisense
GATTTCTTGGCAAATTCTGTTGCTT 124 429 81 Antisense
TCTGTTGCTTTTAAGATTTCTGCTC 42 609 96 Antisense
TTTTAAGATTTCTGCTCTACCGTCC 496 675 104 Antisense
ATCGCCTCTACATCTCAAGTAACGC 481 37 136 Antisense
TACATCTCAAGTAACGCTACACCAA 475 319 144 Antisense
GTAACGCTACACCAAAAGATGCTGA 468 461 154 Antisense
AAGATGCTGAACTCACGGATAGACA 660 153 169 Antisense
CGGATAGACAAATCACAATTCGTGG 266 233 184 Antisense
TTGGACATTTTCCTGCCAACATCCA 136 709 222 Antisense
CCAACATCCATTCGCCTGGAACTTT 606 275 237 Antisense
Sequence Source Affymetrix Proprietary Database