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[175154_s_at]

Description AV200994_rc /REP_DB=TREMBL Accession /GB=AV200994 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 56      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 509.1
(-2.6)
P 		526.4
(-2.2)
P 		763.1
(3)
P 		488.9
(-3)
P 		274
B 431.5
(-3)
P 		573
(-0.7)
P 		804.4
(3)
P 		476.9
(-2.3)
P 		373
C 481.8
(-3)
P 		516.9
(-2.4)
P 		851.4
(3)
P 		492.9
(-2.8)
P 		370
avr 474.1
(-3) 		538.8
(-1.8) 		806.3
(3) 		486.2
(-2.8) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 357
(-3)
P 		413.4
(-1.9)
P 		482
(-0.6)
P 		433.2
(-1.5)
P 		577
(1.3)
P 		667.5
(3)
P 		311
B 429.4
(-3)
P 		558
(-1.4)
P 		546.4
(-1.5)
P 		487.8
(-2.3)
P 		626.1
(-0.5)
P 		903.4
(3)
P 		474
C 393.4
(-3)
P 		514.9
(-1.7)
P 		422
(-2.7)
P 		442.2
(-2.5)
P 		521.8
(-1.6)
P 		953.3
(3)
P 		560
avr 393.3
(-3) 		495.4
(-1.6) 		483.5
(-1.8) 		454.4
(-2.2) 		575
(-0.6) 		841.4
(3) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 185.4
(2.3)
P 		114.3
(-1)
P 		199.5
(3)
P 		71.6
(-3)
P 		128
B 137.6
(-0.5)
P 		141.5
(-0.2)
P 		186.4
(3)
P 		101.6
(-3)
P 		85
C 159.5
(-0.9)
P 		148.6
(-1.2)
P 		296.7
(3)
P 		83.1
(-3)
P 		214
avr 160.8
(0.2) 		134.8
(-0.9) 		227.5
(3) 		85.4
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 65.8
(-3)
P 		147
(1.5)
P 		105
(-0.8)
P 		109.9
(-0.6)
P 		174.1
(3)
P 		162.5
(2.4)
P 		108
B 149.4
(-2.4)
P 		185.7
(-1.4)
P 		132.7
(-2.9)
P 		129.2
(-3)
P 		254.4
(0.6)
P 		336.9
(3)
P 		208
C 145.8
(-1.5)
P 		157.1
(-1.2)
P 		107.4
(-2.5)
P 		88.9
(-3)
P 		168.8
(-0.9)
P 		319.1
(3)
P 		230
avr 120.3
(-2.6) 		163.3
(-1) 		115
(-2.8) 		109.3
(-3) 		199.1
(0.3) 		272.8
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175154_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21522
Sequence Type Exemplar sequence
Representative Public ID AV200994 NCBI
Target Description AV200994_rc /REP_DB=TREMBL Accession /GB=AV200994 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068523 NCBI Caenorhabditis elegans C11D2.4 (C11D2.4) mRNA, complete cds. 11/11 None
SNAP00000030428 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6155660:6156875:-1 9/11 None
GENEFINDER00000030438 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6155660:6156875:-1 9/11 None
C11D2.4 ENSEMBL cdna:known chromosome:CEL140:IV:6155536:6156880:-1 gene:C11D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6155551-6155826(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11D2.4
Entrez Gene 177378 Entrez gene
SwissProt O45069 EMBL-EBI
WormBase CE31300 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2993.1.S1_AT similar to C11D2.4 cfa
DROSGENOME1:153271_AT dm
DROSOPHILA_2:1635476_AT dm
CHICKEN:GGA.11444.1.S1_S_AT similar to chromosome 9 open reading frame 64 gga
CHICKEN:GGA.17921.1.A1_AT similar to chromosome 9 open reading frame 64 gga
HG-U133B:223697_X_AT chromosome 9 open reading frame 64 hs
HG-U133_PLUS_2:223697_X_AT chromosome 9 open reading frame 64 hs
U133_X3P:G13325177_3P_AT chromosome 9 open reading frame 64 hs
U133_X3P:HS.145809.0.A1_3P_AT chromosome 9 open reading frame 64 hs
HG-U133_PLUS_2:235940_AT chromosome 9 open reading frame 64 hs
HG-U133B:235940_AT chromosome 9 open reading frame 64 hs
HG-U95E:70680_AT chromosome 9 open reading frame 64 hs
HG-U95E:82842_I_AT chromosome 9 open reading frame 64 hs
HG-U95E:82846_R_AT chromosome 9 open reading frame 64 hs
MG-U74AV2:160513_AT RIKEN cDNA 2210016F16 gene mm
MOE430A:1428331_AT RIKEN cDNA 2210016F16 gene mm
MOUSE430A_2:1428331_AT RIKEN cDNA 2210016F16 gene mm
MOUSE430_2:1428331_AT RIKEN cDNA 2210016F16 gene mm
MOE430A:1452744_AT RIKEN cDNA 2210016F16 gene mm
MOUSE430A_2:1452744_AT RIKEN cDNA 2210016F16 gene mm
MOUSE430_2:1452744_AT RIKEN cDNA 2210016F16 gene mm
MU19KSUBA:TC15435_AT PREDICTED: hypothetical protein LOC70153 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC22795_AT PREDICTED: hypothetical protein LOC70153 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC22795_G_AT PREDICTED: hypothetical protein LOC70153 [Mus musculus], mRNA sequence mm
RG-U34C:RC_AI178237_AT similar to CG9752-PA (predicted) rn
RAE230B:1394737_AT similar to CG9752-PA (predicted) rn
RAT230_2:1394737_AT similar to CG9752-PA (predicted) rn
RAE230B:1382468_AT similar to CG9752-PA (predicted) rn
RAT230_2:1382468_AT similar to CG9752-PA (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAM81120 Hypothetical protein C11D2.4 [Caenorhabditis elegans] ref|NP_500924.2| C11D2.4 [Caenorhabditis elegans] 0.0
blast T32961 hypothetical protein C11D2.4 - Caenorhabditis elegans 0.0
blast CAE61596 Hypothetical protein CBG05511 [Caenorhabditis briggsae] 1.0E-161
Sequence
Target Sequence 
>C. ELEGANS:175154_S_AT
gaacgaacttcgtgaaaccgatccaagattctctgatgtttgtgaagttaacgccatgga
agttgatgtctatgtctggggatatcgtcgactttatgctgcggatgttgaaaagaaagt
cccgttccacaggactcgctgtatttattattaaatctgtatatgtaaatattagtattt
aatttttagtgtgaattctagtgattttagcttttcgtatcatcttctgttttcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGAACTTCGTGAAACCGATCCA 631 345 20 Antisense
GAAACCGATCCAAGATTCTCTGATG 698 357 33 Antisense
GATCCAAGATTCTCTGATGTTTGTG 585 415 39 Antisense
GATGTTTGTGAAGTTAACGCCATGG 395 409 54 Antisense
GGAAGTTGATGTCTATGTCTGGGGA 337 531 77 Antisense
GATGTCTATGTCTGGGGATATCGTC 159 409 84 Antisense
GGGATATCGTCGACTTTATGCTGCG 308 495 98 Antisense
GTCGACTTTATGCTGCGGATGTTGA 151 475 106 Antisense
AGAAAGTCCCGTTCCACAGGACTCG 663 71 133 Antisense
CTTTTCGTATCATCTTCTGTTTTCA 76 223 230 Antisense
TTCGTATCATCTTCTGTTTTCATTC 669 695 233 Antisense
Sequence Source Affymetrix Proprietary Database