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[175153_at]

Description AV199817_rc /REP_DB=TREMBL Accession /GB=AV199817 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk552b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 05      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 06      4grp_total > 37      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 116.8
(-1.1)
P 		100.2
(-3)
P 		113.4
(-1.5)
P 		151.6
(3)
P 		51
B 154.7
(3)
P 		136.9
(1.8)
P 		67
(-3)
M 		99.8
(-0.8)
P 		88
C 167.3
(3)
P 		138.8
(0.6)
P 		95.3
(-3)
P 		133.7
(0.2)
P 		72
avr 146.3
(3) 		125.3
(0.7) 		91.9
(-3) 		128.4
(1) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 243.9
(3)
P 		114.8
(-3)
P 		177
(-0.1)
P 		181
(0.1)
P 		194.1
(0.7)
P 		130.4
(-2.3)
P 		129
B 165.7
(0.4)
P 		173.2
(1.5)
P 		152.2
(-1.5)
P 		141.4
(-3)
P 		184.1
(3)
P 		165.3
(0.4)
P 		43
C 156.2
(-1.6)
P 		221.2
(3)
P 		171.5
(-0.5)
P 		149.1
(-2.1)
P 		136.6
(-3)
P 		159.8
(-1.4)
P 		85
avr 188.6
(3) 		169.7
(-0.1) 		166.9
(-0.5) 		157.2
(-2.1) 		171.6
(0.2) 		151.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 42.5
(3)
P 		21.8
(-3)
P 		29.6
(-0.7)
P 		22.2
(-2.9)
P 		21
B 49.3
(3)
P 		33.8
(0.2)
P 		15.5
(-3)
M 		21.3
(-2)
P 		34
C 55.4
(3)
P 		39.9
(0.2)
P 		33.2
(-1)
P 		22.5
(-3)
P 		33
avr 49.1
(3) 		31.8
(-0.8) 		26.1
(-2.1) 		22
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 45
(-0)
P 		40.8
(-1)
P 		38.6
(-1.5)
P 		45.9
(0.2)
P 		58.6
(3)
P 		31.8
(-3)
P 		27
B 57.7
(0.3)
P 		57.7
(0.3)
P 		37
(-3)
P 		37.5
(-2.9)
P 		74.8
(3)
P 		61.6
(0.9)
P 		38
C 57.9
(1.5)
P 		67.5
(3)
P 		43.7
(-0.8)
P 		30
(-3)
P 		44.2
(-0.7)
P 		53.5
(0.8)
P 		38
avr 53.5
(1.4) 		55.3
(1.9) 		39.8
(-2.4) 		37.8
(-3) 		59.2
(3) 		49
(0.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21007
Sequence Type Exemplar sequence
Representative Public ID AV199817 NCBI
Target Description AV199817_rc /REP_DB=TREMBL Accession /GB=AV199817 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk552b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027569 NCBI Caenorhabditis elegans T02C1.2 (T02C1.2) mRNA, complete cds. 11/11 None
T02C1.2 ENSEMBL cdna:known chromosome:CEL140:III:9251562:9252970:1 gene:T02C1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042152 3/11 Cross Hyb Matching Probes None
SNAP00000042151 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9252676-9252956(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02C1.2
Entrez Gene 176306 Entrez gene
SwissProt Q7YWU1 EMBL-EBI
WormBase CE34979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17940 Hypothetical protein T02C1.2 [Caenorhabditis elegans] ref|NP_001022740.1| T02C1.2 [Caenorhabditis elegans] 1.0E-105
blast CAE65256 Hypothetical protein CBG10146 [Caenorhabditis briggsae] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:175153_AT
ccctgacgaagagtccaatcccgttgaaataattacttgtgatcaaaaccaacaacctgt
agatgttgtctaatgtacttgtatttctcatatcttgtatgtattatttttatcttcatg
aaacatgttcatgcatattggtaaccctacgatttcataacagttctgctttctctcagc
tttaaaacttgttccgtattcggtgtcttgtggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTGACGAAGAGTCCAATCCCGTT 486 257 13 Antisense
GTCCAATCCCGTTGAAATAATTACT 532 477 25 Antisense
GTGATCAAAACCAACAACCTGTAGA 164 481 51 Antisense
AGATGTTGTCTAATGTACTTGTATT 460 67 73 Antisense
TGTACTTGTATTTCTCATATCTTGT 634 559 86 Antisense
GTTCATGCATATTGGTAACCCTACG 333 443 139 Antisense
GGTAACCCTACGATTTCATAACAGT 601 1 152 Antisense
ATAACAGTTCTGCTTTCTCTCAGCT 327 25 169 Antisense
TTCTGCTTTCTCTCAGCTTTAAAAC 608 693 176 Antisense
CTCTCAGCTTTAAAACTTGTTCCGT 307 229 185 Antisense
TTCCGTATTCGGTGTCTTGTGGTAA 229 697 204 Antisense
Sequence Source Affymetrix Proprietary Database