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[175152_s_at] mitochrondrial 2-oxoglutarate/malate carrier protein

Description AU116133_rc /REP_DB=TREMBL Accession /GB=AU116133 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 34      6grp_total > 72      4grp_total > 52      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1491
1 2 3 4 range
A 2155.2
(3)
P 		1727.8
(1.1)
P 		1928.7
(2)
P 		790.4
(-3)
P 		1365
B 1569.2
(0.4)
P 		2106.2
(3)
P 		1574.8
(0.4)
P 		866.5
(-3)
P 		1240
C 2281.2
(3)
P 		1996.6
(1.8)
P 		1787.8
(0.9)
P 		884.4
(-3)
P 		1397
avr 2001.9
(3) 		1943.5
(2.7) 		1763.8
(1.8) 		847.1
(-3) 		1155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2180
1 2 3 4 5 6 range
A 2485.5
(0.5)
P 		2681.9
(1.1)
P 		3129.7
(2.7)
P 		3114.2
(2.6)
P 		3227.5
(3)
P 		1459.1
(-3)
P 		1768
B 2080.8
(-3)
P 		2885.4
(0.1)
P 		3632.8
(3)
P 		2279.8
(-2.2)
P 		2596.7
(-1)
P 		2209.6
(-2.5)
P 		1552
C 1585.7
(-3)
P 		2534.6
(-0.2)
P 		1980.4
(-1.8)
P 		3639.3
(3)
P 		2041.9
(-1.7)
P 		2492.2
(-0.4)
P 		2054
avr 2050.7
(-3) 		2700.6
(1.1) 		2914.3
(2.4) 		3011.1
(3) 		2622
(0.6) 		2053.6
(-3) 		960
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 784.7
(3)
P 		375.1
(-0.7)
P 		504.2
(0.5)
P 		115.7
(-3)
P 		669
B 500.4
(2.6)
P 		520.2
(3)
P 		364.9
(0.2)
P 		184.6
(-3)
P 		336
C 755.2
(3)
P 		574
(1.2)
P 		623.1
(1.7)
P 		149.1
(-3)
P 		606
avr 680.1
(3) 		489.8
(0.8) 		497.4
(0.9) 		149.8
(-3) 		530

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 700
1 2 3 4 5 6 range
A 458.2
(-2)
P 		953.8
(2.8)
P 		681.6
(0.2)
P 		789.8
(1.2)
P 		973.9
(3)
P 		355.3
(-3)
P 		619
B 724
(-1.4)
P 		960.4
(1.7)
P 		882.2
(0.7)
P 		603.8
(-3)
P 		1055
(3)
P 		824
(-0.1)
P 		451
C 587.7
(-1.5)
P 		773.4
(1.9)
P 		504.1
(-3)
P 		731.9
(1.1)
P 		660.7
(-0.2)
P 		834.3
(3)
P 		330
avr 590
(-3) 		895.9
(3) 		689.3
(-1.1) 		708.5
(-0.7) 		896.5
(3) 		671.2
(-1.4) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175152_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20805
Sequence Type Exemplar sequence
Representative Public ID AU116133 NCBI
Target Description AU116133_rc /REP_DB=TREMBL Accession /GB=AU116133 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061293 NCBI Caenorhabditis elegans B0432.4 (B0432.4) mRNA, complete cds. 11/11 A 
B0432.4 ENSEMBL cdna:known chromosome:CEL140:II:286632:288660:1 gene:B0432.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033639 6/11 Cross Hyb Matching Probes None
GENEFINDER00000033652 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:288343-288622(+) 100.0 100.0
Public Domain and Genome References
Gene Title mitochrondrial 2-oxoglutarate/malate carrier protein
Ensembl B0432.4
Entrez Gene 173414 Entrez gene
SwissProt P90992 EMBL-EBI
WormBase CE32102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13617_AT mitochondrial substrate carrier family protein at
ATH1-121501:264000_AT mitochondrial substrate carrier family protein at
CANINE:1585137_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24259.1.S1_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24259.1.S1_S_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
CANINE_2:CFAAFFX.24260.1.S1_AT similar to Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) cfa
DROSOPHILA_2:1630575_AT dm
DROSGENOME1:141757_AT dm
HG-U133_PLUS_2:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A_2:207088_S_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133_PLUS_2:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-FOCUS:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U133A_2:209003_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HUGENEFL:X66114_RNA1_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
U133_X3P:G4506996_3P_A_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
HG-U95AV2:32197_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 hs
MG-U74AV2:160295_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOE430A:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOUSE430A_2:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MOUSE430_2:1426586_AT solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 mm
MU19KSUBB:TC34374_AT Solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 (Slc25a11), mRNA mm
MU19KSUBC:TC41538_AT Solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 (Slc25a11), mRNA mm
RG-U34A:U84727_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
RAE230A:1370060_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
RAT230_2:1370060_AT solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37890 Hypothetical protein B0432.4 [Caenorhabditis elegans] ref|NP_493694.2| B0432.4 [Caenorhabditis elegans] 1.0E-163
blast CAE62839 Hypothetical protein CBG07018 [Caenorhabditis briggsae] 1.0E-150
blast AAH72308 MGC82600 protein [Xenopus laevis] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.3E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.2E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.7E-29
Sequence
Target Sequence 
>C. ELEGANS:175152_S_AT
ggaagggctttaccccatattacatgcgtcttggaccccataccgtgctcactttcatca
ttttggaacaaatgaatgccgcctacttccaatatgtgctcaagcgagatgtgaccagtg
ccttgtagaatcgatttttcagctatttttcgaccaaaaaatcacagttttattattttt
tttgaacataattttatgctatttaggttgtgttgtgtacacttttcagattttaaattt
tggccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGGGCTTTACCCCATATTACAT 269 529 14 Antisense
GCTTTACCCCATATTACATGCGTCT 161 305 20 Antisense
ATATTACATGCGTCTTGGACCCCAT 90 17 30 Antisense
GTGCTCACTTTCATCATTTTGGAAC 569 479 58 Antisense
GAACAAATGAATGCCGCCTACTTCC 143 353 79 Antisense
GCCTACTTCCAATATGTGCTCAAGC 195 283 94 Antisense
ATGTGCTCAAGCGAGATGTGACCAG 559 49 107 Antisense
AAGCGAGATGTGACCAGTGCCTTGT 32 151 115 Antisense
GTTGTGTTGTGTACACTTTTCAGAT 568 437 220 Antisense
GTTGTGTACACTTTTCAGATTTTAA 39 437 225 Antisense
TTTCAGATTTTAAATTTTGGCCAGA 413 671 237 Antisense
Sequence Source Affymetrix Proprietary Database