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[175151_at]

Description AU116301_rc /REP_DB=TREMBL Accession /GB=AU116301 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk743a9 : 3prime end, single read.
Cluster 6grp_total > 33      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 189.6
(3)
P 		136.4
(-2.2)
A 		128.7
(-3)
A 		157.8
(-0.1)
P 		61
B 212.8
(3)
P 		114.9
(-3)
A 		135.7
(-1.7)
P 		162
(-0.1)
P 		98
C 198.9
(3)
P 		103
(-3)
M 		180.5
(1.8)
P 		107.4
(-2.7)
P 		96
avr 200.4
(3) 		118.1
(-3) 		148.3
(-0.8) 		142.4
(-1.2) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 62.4
(0.6)
A 		49.1
(-0.3)
A 		97.2
(3)
A 		52
(-0.1)
A 		9.1
(-3)
A 		58.1
(0.3)
A 		88
B 86.6
(2.5)
P 		61
(-0.6)
A 		58.5
(-0.9)
A 		90.3
(3)
A 		41.4
(-3)
A 		48.2
(-2.2)
A 		49
C 112.5
(3)
P 		39
(-3)
A 		83.5
(0.6)
A 		39.5
(-3)
A 		74
(-0.1)
A 		41.1
(-2.8)
M 		74
avr 87.2
(3) 		49.7
(-1.9) 		79.7
(2) 		60.6
(-0.5) 		41.5
(-3) 		49.1
(-2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 69
(3)
P 		29.6
(-2.2)
A 		33.6
(-1.6)
A 		23.1
(-3)
P 		46
B 67.9
(3)
P 		28.4
(-3)
A 		31.4
(-2.5)
P 		34.5
(-2.1)
P 		40
C 65.9
(3)
P 		29.6
(-1.6)
M 		62.9
(2.6)
P 		18.1
(-3)
P 		48
avr 67.6
(3) 		29.2
(-2.4) 		42.6
(-0.5) 		25.2
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.5
(-0.1)
A 		17.5
(1.8)
A 		21.2
(3)
A 		13.2
(0.4)
A 		2.7
(-3)
A 		14.1
(0.7)
A 		19
B 30.1
(3)
P 		20.3
(-0.7)
A 		14.2
(-3)
A 		23.9
(0.7)
A 		16.8
(-2)
A 		18
(-1.6)
A 		16
C 41.7
(3)
P 		11.9
(-2.3)
A 		21.3
(-0.6)
A 		7.9
(-3)
A 		23.9
(-0.2)
A 		13.7
(-2)
M 		34
avr 27.8
(3) 		16.6
(-2.1) 		18.9
(-1) 		15
(-2.8) 		14.5
(-3) 		15.3
(-2.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21865
Sequence Type Exemplar sequence
Representative Public ID AU116301 NCBI
Target Description AU116301_rc /REP_DB=TREMBL Accession /GB=AU116301 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk743a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074010 NCBI Caenorhabditis elegans F53C11.1 (F53C11.1) mRNA, complete cds. 11/11 A 
SNAP00000007155 ENSEMBL cdna:SNAP chromosome:CEL140:V:13778955:13781138:1 9/11 None
GENEFINDER00000007171 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13778393:13780341:1 11/11 None
F53C11.1 ENSEMBL cdna:known chromosome:CEL140:V:13778340:13780346:1 gene:F53C11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13779954-13780283(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.1
Entrez Gene 179871 Entrez gene
SwissProt Q93765 EMBL-EBI
WormBase CE32431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02120 Hypothetical protein F53C11.1 [Caenorhabditis elegans] ref|NP_506411.2| F53C11.1 [Caenorhabditis elegans] 0.0
blast CAE66246 Hypothetical protein CBG11490 [Caenorhabditis briggsae] 1.0E-106
blast CAB02085 Hypothetical protein F20G2.5 [Caenorhabditis elegans] ref|NP_506410.1| F20G2.5 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-29
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.9E-6
Sequence
Target Sequence 
>C. ELEGANS:175151_AT
aaccttcccgatgtagtgattggtgatcccggagctaagatcagagtcgaattcggagct
cctggcaaaactccagttggagtagagtttaatgaaactacgtcaggtgcgggtgctaga
tctgcaaatgcaacatatatgtctgttacattcgatggaacgactgtgaaatcatcgttc
tcatttgtttttaacgtagagagtttgtttccgagtacgtctacaacaacggacactcca
tttgaaacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTTCCCGATGTAGTGATTGGTG 707 141 13 Antisense
GTAGTGATTGGTGATCCCGGAGCTA 73 457 25 Antisense
TCCCGGAGCTAAGATCAGAGTCGAA 2 597 39 Antisense
CAGAGTCGAATTCGGAGCTCCTGGC 636 205 54 Antisense
GGAGCTCCTGGCAAAACTCCAGTTG 6 521 67 Antisense
GAAACTACGTCAGGTGCGGGTGCTA 340 357 106 Antisense
GTGCGGGTGCTAGATCTGCAAATGC 19 477 119 Antisense
ATGTCTGTTACATTCGATGGAACGA 385 47 151 Antisense
GAAATCATCGTTCTCATTTGTTTTT 63 363 180 Antisense
GTTTCCGAGTACGTCTACAACAACG 710 449 219 Antisense
AACGGACACTCCATTTGAAACAACA 434 143 240 Antisense
Sequence Source Affymetrix Proprietary Database