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[175150_at]

Description AV177705_rc /REP_DB=TREMBL Accession /GB=AV177705 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 58      6grp_total > 59      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1918
1 2 3 4 range
A 2817.6
(3)
P 		1028.9
(-3)
P 		2733
(2.7)
P 		1605.3
(-1.1)
P 		1789
B 1685.1
(-3)
P 		2545.8
(3)
P 		1993.2
(-0.9)
P 		2171
(0.4)
P 		861
C 2316
(2.2)
P 		2533.2
(3)
P 		2457.7
(2.7)
P 		899.6
(-3)
P 		1634
avr 2272.9
(2.1) 		2036
(0.4) 		2394.6
(3) 		1558.6
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1643
1 2 3 4 5 6 range
A 2031.5
(-3)
P 		2628.4
(0.8)
P 		2031.9
(-3)
P 		2416.8
(-0.5)
P 		2972.6
(3)
P 		2933.7
(2.8)
P 		941
B 3674.8
(3)
P 		2213
(-3)
P 		3387
(1.8)
P 		2632.5
(-1.3)
P 		2585
(-1.5)
P 		2947.3
(0)
P 		1462
C 3436.9
(2.9)
P 		2179.7
(-3)
P 		2888
(0.3)
P 		3302.5
(2.3)
P 		3405
(2.8)
P 		3455.5
(3)
P 		1276
avr 3047.7
(2.5) 		2340.4
(-3) 		2769
(0.3) 		2783.9
(0.4) 		2987.5
(2) 		3112.2
(3) 		772
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 874
1 2 3 4 range
A 1025.9
(3)
P 		223.4
(-3)
P 		714.5
(0.7)
P 		235
(-2.9)
P 		803
B 537.4
(-0.3)
P 		628.8
(3)
P 		461.9
(-3)
P 		462.6
(-3)
P 		167
C 766.7
(2.2)
P 		728.3
(1.9)
P 		856.6
(3)
P 		151.7
(-3)
P 		705
avr 776.7
(3) 		526.8
(-0) 		677.7
(1.8) 		283.1
(-3) 		494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 374.5
(-3)
P 		934.8
(3)
P 		442.5
(-2.3)
P 		613
(-0.4)
P 		897
(2.6)
P 		714.3
(0.6)
P 		560
B 1278.6
(3)
P 		736.6
(-2.6)
P 		822.5
(-1.7)
P 		697.2
(-3)
P 		1050.3
(0.6)
P 		1099
(1.1)
P 		581
C 1273.9
(3)
P 		665.1
(-3)
P 		735
(-2.3)
P 		664.1
(-3)
P 		1101.8
(1.3)
P 		1156.8
(1.8)
P 		610
avr 975.7
(2.3) 		778.8
(-1) 		666.7
(-2.9) 		658.1
(-3) 		1016.4
(3) 		990
(2.6) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21439
Sequence Type Exemplar sequence
Representative Public ID AV177705 NCBI
Target Description AV177705_rc /REP_DB=TREMBL Accession /GB=AV177705 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070044 NCBI Caenorhabditis elegans M02B1.3 (M02B1.3) mRNA, complete cds. 11/11 None
M02B1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12836478:12840644:1 gene:M02B1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12840023-12840348(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B1.3
Entrez Gene 178236 Entrez gene
SwissProt Q93892 EMBL-EBI
WormBase CE12316 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03202 Hypothetical protein M02B1.3 [Caenorhabditis elegans] ref|NP_502445.1| M02B1.3 [Caenorhabditis elegans] 1.0E-176
blast CAE74557 Hypothetical protein CBG22316 [Caenorhabditis briggsae] 1.0E-169
blast AAK29804 Hypothetical protein F41H10.5 [Caenorhabditis elegans] ref|NP_500789.1| F41H10.5 [Caenorhabditis elegans] 6.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502445.1 6 46-68,89-111,154-176,181-203,223-245,252-274
M02B1.3 6 46-68,89-111,154-176,181-203,223-245,252-274
Sequence
Target Sequence 
>C. ELEGANS:175150_AT
ctctatttttatccgttccgtgtgttcaaacgatccacaatttcatccactacttttctc
accaatatttcatttttgttcatatcacacgaaggctttacaatatttgtacaagcatta
ttctcccttctagaacataattataaccacataatccaaatcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTATTTTTATCCGTTCCGTGTGT 644 229 105 Antisense
GTTCCGTGTGTTCAAACGATCCACA 611 441 119 Antisense
ACGATCCACAATTTCATCCACTACT 563 91 134 Antisense
CACTACTTTTCTCACCAATATTTCA 566 197 152 Antisense
TCATTTTTGTTCATATCACACGAAG 19 621 174 Antisense
GTTCATATCACACGAAGGCTTTACA 143 445 182 Antisense
ACACGAAGGCTTTACAATATTTGTA 392 101 191 Antisense
TGTACAAGCATTATTCTCCCTTCTA 506 559 212 Antisense
GCATTATTCTCCCTTCTAGAACATA 144 309 219 Antisense
TCCCTTCTAGAACATAATTATAACC 188 597 228 Antisense
TATAACCACATAATCCAAATCGATA 236 659 246 Antisense
Sequence Source Affymetrix Proprietary Database