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[175149_s_at] Armadillo/beta-catenin-like repeats (2 domains)

Description AU115598_rc /REP_DB=TREMBL Accession /GB=AU115598 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734e3 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 13.2
(-1.4)
A 		9.3
(-2.1)
A 		5
(-3)
A 		34.9
(3)
A 		30
B 3.8
(-3)
A 		32.2
(1.8)
A 		5.6
(-2.7)
A 		39.2
(3)
A 		35
C 23
(3)
A 		6
(-3)
A 		16.1
(0.6)
A 		19.1
(1.6)
A 		17
avr 13.3
(-1.8) 		15.8
(-1.1) 		8.9
(-3) 		31.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 37.2
(-1)
A 		6.9
(-2.8)
A 		3.4
(-3)
A 		40.3
(-0.8)
A 		59
(0.3)
A 		103.5
(3)
M 		100
B 21.8
(-2)
A 		32.2
(-1.4)
A 		4.6
(-3)
A 		32.9
(-1.3)
A 		24.4
(-1.8)
A 		105.4
(3)
P 		101
C 3.7
(-3)
A 		3.5
(-3)
A 		20.2
(-1.3)
A 		6.4
(-2.7)
A 		37.6
(0.4)
A 		63.5
(3)
A 		60
avr 20.9
(-2.2) 		14.2
(-2.6) 		9.4
(-3) 		26.5
(-1.7) 		40.3
(-0.7) 		90.8
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.8
(2.5)
A 		2
(-1.9)
A 		1.3
(-3)
A 		5.1
(3)
A 		4
B 1.2
(-3)
A 		7.9
(2.6)
A 		1.3
(-2.9)
A 		8.4
(3)
A 		7
C 7.6
(3)
A 		1.7
(-3)
A 		5.6
(1)
A 		3.2
(-1.5)
A 		6
avr 4.5
(0.7) 		3.9
(-0.5) 		2.7
(-3) 		5.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 6.9
(-1.5)
A 		2.5
(-2.6)
A 		0.7
(-3)
A 		10.2
(-0.7)
A 		17.8
(1.2)
A 		25.2
(3)
M 		25
B 7.6
(-2)
A 		10.7
(-1.5)
A 		1.1
(-3)
A 		8.7
(-1.8)
A 		9.9
(-1.6)
A 		39.3
(3)
P 		38
C 1.4
(-2.9)
A 		1.1
(-3)
A 		5.1
(-1.8)
A 		1.3
(-2.9)
A 		12.2
(0.3)
A 		21.3
(3)
A 		20
avr 5.3
(-2.3) 		4.8
(-2.4) 		2.3
(-3) 		6.7
(-2) 		13.3
(-0.5) 		28.6
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175149_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21441
Sequence Type Exemplar sequence
Representative Public ID AU115598 NCBI
Target Description AU115598_rc /REP_DB=TREMBL Accession /GB=AU115598 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069999 NCBI Caenorhabditis elegans F53B2.5 (F53B2.5) mRNA, complete cds. 11/11 None
SNAP00000026522 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12528535:12530631:-1 11/11 None
GENEFINDER00000026532 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12528535:12530631:-1 11/11 None
F53B2.5 ENSEMBL cdna:known chromosome:CEL140:IV:12528535:12530634:-1 gene:F53B2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12528582-12528902(-) 100.0 100.0
Public Domain and Genome References
Gene Title Armadillo/beta-catenin-like repeats (2 domains)
Ensembl F53B2.5
Entrez Gene 178204 Entrez gene
SwissProt Q20703 EMBL-EBI
WormBase CE28029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98127 Hypothetical protein F53B2.5 [Caenorhabditis elegans] ref|NP_502400.1| F53B2.5 [Caenorhabditis elegans] 0.0
blast CAE67007 Hypothetical protein CBG12407 [Caenorhabditis briggsae] 1.0E-167
blast NP_704431 importin alpha, putative [Plasmodium falciparum 3D7] emb|CAD51250.1| importin alpha, putative [Plasmodium falciparum 3D7] gb|AAO85774.1| karyopherin alpha; importin alpha [Plasmodium falciparum] 8.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000225 EMBL-EBI Armadillo 6.3E-8
Sequence
Target Sequence 
>C. ELEGANS:175149_S_AT
atcttctcgtctccttaggaatagtacagcattttccagctcttctcgattttgatgatg
ttcgtttgaatgaaaaggcggcgacaactgcaactgaactgctccgtgagcatccatggc
agtacacattgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCTCGTCTCCTTAGGAATAGT 293 31 13 Antisense
GTCTCCTTAGGAATAGTACAGCATT 700 467 21 Antisense
TAGTACAGCATTTTCCAGCTCTTCT 464 653 34 Antisense
TTCCAGCTCTTCTCGATTTTGATGA 205 701 46 Antisense
CAGCTCTTCTCGATTTTGATGATGT 60 205 49 Antisense
GATGATGTTCGTTTGAATGAAAAGG 540 411 66 Antisense
GAAAAGGCGGCGACAACTGCAACTG 132 355 84 Antisense
GACAACTGCAACTGAACTGCTCCGT 697 365 95 Antisense
TGCAACTGAACTGCTCCGTGAGCAT 267 577 101 Antisense
TCCGTGAGCATCCATGGCAGTACAC 15 593 115 Antisense
CATCCATGGCAGTACACATTGTTCC 533 211 123 Antisense
Sequence Source Affymetrix Proprietary Database