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[175148_at]

Description AV180658_rc /REP_DB=TREMBL Accession /GB=AV180658 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 652.7
(3)
P 		605.1
(2.2)
P 		551.9
(1.2)
P 		314.3
(-3)
P 		338
B 426
(-2.5)
P 		585.6
(1.1)
P 		671.9
(3)
P 		404.3
(-3)
P 		268
C 516.2
(2.2)
P 		544.8
(3)
P 		537.6
(2.8)
P 		319.8
(-3)
P 		225
avr 531.6
(1.6) 		578.5
(2.8) 		587.1
(3) 		346.1
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 442.7
(-0.8)
P 		482.7
(1.2)
P 		422
(-1.8)
P 		414.4
(-2.2)
P 		398.2
(-3)
P 		518.9
(3)
P 		121
B 474
(0.7)
P 		373.5
(-1.6)
P 		308.1
(-3)
P 		357.2
(-1.9)
P 		571.3
(2.8)
P 		580.1
(3)
P 		272
C 424.3
(-0.5)
P 		358.3
(-3)
P 		436.4
(-0)
P 		359.1
(-3)
P 		404.1
(-1.3)
P 		515.6
(3)
P 		157
avr 447
(-0.4) 		404.8
(-2) 		388.8
(-2.6) 		376.9
(-3) 		457.9
(0) 		538.2
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 237.7
(3)
P 		131.4
(-0.3)
P 		144.3
(0.1)
P 		46
(-3)
P 		192
B 135.8
(1.3)
P 		144.6
(2)
P 		155.7
(3)
P 		86.2
(-3)
P 		70
C 170.9
(2.3)
P 		156.6
(1.6)
P 		187.4
(3)
P 		53.9
(-3)
P 		134
avr 181.5
(3) 		144.2
(1.1) 		162.5
(2) 		62
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 81.6
(-3)
P 		171.7
(3)
P 		91.9
(-2.3)
P 		105.1
(-1.4)
P 		120.1
(-0.4)
P 		126.3
(-0)
P 		90
B 164.9
(0.4)
P 		124.3
(-1.1)
P 		74.8
(-3)
P 		94.6
(-2.2)
P 		232.1
(3)
P 		216.3
(2.4)
P 		157
C 157.3
(2.1)
P 		109.3
(-0.8)
P 		111.1
(-0.7)
P 		72.2
(-3)
P 		130.8
(0.5)
P 		172.6
(3)
P 		100
avr 134.6
(0.3) 		135.1
(0.3) 		92.6
(-2.9) 		90.6
(-3) 		161
(2.2) 		171.7
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21158
Sequence Type Exemplar sequence
Representative Public ID AV180658 NCBI
Target Description AV180658_rc /REP_DB=TREMBL Accession /GB=AV180658 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067293 NCBI Caenorhabditis elegans ZK1010.2 (ZK1010.2) mRNA, complete cds. 11/11 None
SNAP00000009410 ENSEMBL cdna:SNAP chromosome:CEL140:III:12974758:12974977:-1 10/11 None
ZK1010.2 ENSEMBL cdna:known chromosome:CEL140:III:12974592:12977378:-1 gene:ZK1010.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009414 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12974657-12974937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.2
Entrez Gene 176717 Entrez gene
SwissProt O18281 EMBL-EBI
WormBase CE33903 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605442_S_AT similar to CG11679-PA cfa
CANINE:1606034_S_AT similar to CG11679-PA cfa
CANINE_2:CFA.1685.1.A1_AT similar to CG11679-PA cfa
CANINE_2:CFA.1685.1.A1_S_AT similar to CG11679-PA cfa
CANINE_2:CFA.1700.1.A1_AT similar to CG11679-PA cfa
CANINE_2:CFAAFFX.1593.1.S1_S_AT similar to CG11679-PA cfa
DROSOPHILA_2:1635654_AT dm
DROSGENOME1:153143_AT dm
CHICKEN:GGA.3216.1.S1_AT similar to hypothetical protein FLJ20627 gga
CHICKEN:GGAAFFX.24066.1.S1_AT similar to hypothetical protein FLJ20627 gga
HG-U133_PLUS_2:220329_S_AT chromosome 6 open reading frame 96 hs
HG-U133A:220329_S_AT chromosome 6 open reading frame 96 hs
HG-U133A_2:220329_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:G8923583_3P_A_AT chromosome 6 open reading frame 96 hs
U133_X3P:HS2.238270.2.S1_3P_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:HS2.238270.2.S1_3P_AT chromosome 6 open reading frame 96 hs
U133_X3P:220329_3P_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:1555201_3P_A_AT chromosome 6 open reading frame 96 hs
HG-U133_PLUS_2:1555201_A_AT chromosome 6 open reading frame 96 hs
HG-U95E:77401_AT chromosome 6 open reading frame 96 hs
MU11KSUBA:AA517191_S_AT RIKEN cDNA 0610042C05 gene mm
MG-U74AV2:104537_AT RIKEN cDNA 0610042C05 gene mm
MOE430A:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430A_2:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430_2:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOE430B:1440281_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430_2:1440281_AT RIKEN cDNA 0610042C05 gene mm
MU19KSUBA:TC21270_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBB:TC32272_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBB:TC32272_G_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBC:TC41611_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
RG-U34C:RC_AI071450_AT Similar to hypothetical protein FLJ20627 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04968 Hypothetical protein ZK1010.2 [Caenorhabditis elegans] emb|CAD90181.1| Hypothetical protein ZK1010.2 [Caenorhabditis elegans] ref|NP_499694.2| ZK1010.2 [Caenorhabditis elegans] 0.0
blast CAE69560 Hypothetical protein CBG15772 [Caenorhabditis briggsae] 1.0E-149
blast XP_782380 PREDICTED: similar to CG11679-PA [Strongylocentrotus purpuratus] 2.0E-40
blast CAB04968 Hypothetical protein ZK1010.2 [Caenorhabditis elegans] emb|CAD90181.1| Hypothetical protein ZK1010.2 [Caenorhabditis elegans] ref|NP_499694.2| ZK1010.2 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003734 EMBL-EBI Protein of unknown function DUF155 6.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009410 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:175148_AT
aagatggtcgacaacacgatcgcccttcgccacgcatcccatctggagtggatgatcatc
gtgctcatcgtcatcgaggtcatcttcgacgtcttccattttgcagacaaaacgccgaaa
agtgtgatgattgtgccggattcttcgaaagctcagcagctcaggaatgaaggaaactag
cttaatctagattaattttaaattcgattttttagattttttgcccagatatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATGGTCGACAACACGATCGCCC 354 155 17 Antisense
GCCACGCATCCCATCTGGAGTGGAT 18 281 45 Antisense
TGGAGTGGATGATCATCGTGCTCAT 24 551 60 Antisense
TGATCATCGTGCTCATCGTCATCGA 340 565 69 Antisense
GTGCTCATCGTCATCGAGGTCATCT 510 479 77 Antisense
TCATCGAGGTCATCTTCGACGTCTT 92 621 87 Antisense
GACGTCTTCCATTTTGCAGACAAAA 482 377 104 Antisense
GTGTGATGATTGTGCCGGATTCTTC 322 487 138 Antisense
CGGATTCTTCGAAAGCTCAGCAGCT 599 243 153 Antisense
AGCTCAGCAGCTCAGGAATGAAGGA 184 79 166 Antisense
TTTAGATTTTTTGCCCAGATATATA 702 673 227 Antisense
Sequence Source Affymetrix Proprietary Database