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[175145_s_at]

Description AV178767_rc /REP_DB=TREMBL Accession /GB=AV178767 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk571f5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 60      6grp_total > 44      4grp_total > 60      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 131.5
(2.4)
P 		133.9
(2.6)
P 		140.7
(3)
P 		45.5
(-3)
A 		95
B 125.2
(0.2)
P 		160.6
(3)
P 		155.8
(2.6)
P 		83.8
(-3)
P 		77
C 132.9
(0.5)
P 		117.3
(-0.3)
P 		183.5
(3)
P 		62.3
(-3)
A 		121
avr 129.9
(1.1) 		137.3
(1.6) 		160
(3) 		63.9
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 102.8
(-1.1)
M 		97.2
(-2.3)
P 		123.3
(3)
P 		93.6
(-3)
M 		94.4
(-2.8)
P 		120.3
(2.4)
P 		30
B 149.6
(1.5)
P 		160.6
(2.4)
P 		168.7
(3)
P 		90.4
(-3)
P 		125
(-0.3)
P 		136.6
(0.5)
P 		78
C 144.3
(3)
P 		101.5
(-1.9)
P 		101.1
(-2)
P 		125.2
(0.8)
P 		121.1
(0.3)
P 		92.3
(-3)
P 		52
avr 132.2
(3) 		119.8
(0.4) 		131
(2.8) 		103.1
(-3) 		113.5
(-0.9) 		116.4
(-0.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 47.9
(3)
P 		29.1
(0.3)
P 		36.8
(1.4)
P 		6.7
(-3)
A 		41
B 39.9
(3)
P 		39.7
(2.9)
P 		36.1
(2)
P 		17.9
(-3)
P 		22
C 44
(0.8)
P 		33.7
(-0.4)
P 		64
(3)
P 		10.5
(-3)
A 		54
avr 43.9
(2.7) 		34.2
(1) 		45.6
(3) 		11.7
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.9
(-3)
M 		34.6
(3)
P 		26.8
(0)
P 		23.7
(-1.2)
M 		28.5
(0.7)
P 		29.3
(1)
P 		16
B 52.1
(2.7)
P 		53.5
(3)
P 		41
(0.5)
P 		23.9
(-3)
P 		50.8
(2.5)
P 		50.9
(2.5)
P 		30
C 53.5
(3)
P 		31
(-1.8)
P 		25.7
(-2.9)
P 		25.2
(-3)
P 		39.2
(-0)
P 		30.9
(-1.8)
P 		28
avr 41.5
(3) 		39.7
(2.4) 		31.2
(-0.6) 		24.3
(-3) 		39.5
(2.3) 		37
(1.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175145_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21042
Sequence Type Exemplar sequence
Representative Public ID AV178767 NCBI
Target Description AV178767_rc /REP_DB=TREMBL Accession /GB=AV178767 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk571f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065712 NCBI Caenorhabditis elegans C34E10.11 (C34E10.11) mRNA, complete cds. 11/11 None
SNAP00000034354 ENSEMBL cdna:SNAP chromosome:CEL140:III:5234575:5235634:1 11/11 None
GENEFINDER00000034367 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5234575:5236119:1 11/11 None
C34E10.11 ENSEMBL cdna:known chromosome:CEL140:III:5234575:5236321:1 gene:C34E10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5235321-5235601(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E10.11
Entrez Gene 175718 Entrez gene
SwissProt Q95QS3 EMBL-EBI
WormBase CE29031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95873 Hypothetical protein C34E10.11 [Caenorhabditis elegans] ref|NP_498113.1| C34E10.11 [Caenorhabditis elegans] 1.0E-118
blast AAK95873 Hypothetical protein C34E10.11 [Caenorhabditis elegans] ref|NP_498113.1| C34E10.11 [Caenorhabditis elegans] 1.0E-104
blast CAE73662 Hypothetical protein CBG21170 [Caenorhabditis briggsae] 5.0E-89
blast CAE73662 Hypothetical protein CBG21170 [Caenorhabditis briggsae] 3.0E-82
blast T15762 hypothetical protein C34E10.5 - Caenorhabditis elegans 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:175145_S_AT
aatgcaatttctcgttcaagtgaattcattactcgttcaaatcttgaaactaaaattctc
gaagcactcgaaaagccaacaatttacgattttgcaattgatcgggctgggaacaagtat
ttcgtacctgaaccagttaaatatcaagaaggaacaccaactcgacaaaaaggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAATTTCTCGTTCAAGTGAAT 596 165 73 Antisense
GAATTCATTACTCGTTCAAATCTTG 185 325 94 Antisense
GAAACTAAAATTCTCGAAGCACTCG 278 355 118 Antisense
GAAGCACTCGAAAAGCCAACAATTT 702 339 133 Antisense
AGCCAACAATTTACGATTTTGCAAT 414 83 146 Antisense
TTTTGCAATTGATCGGGCTGGGAAC 74 621 162 Antisense
GGCTGGGAACAAGTATTTCGTACCT 51 541 177 Antisense
CAAGTATTTCGTACCTGAACCAGTT 324 177 186 Antisense
GTACCTGAACCAGTTAAATATCAAG 172 459 196 Antisense
CAAGAAGGAACACCAACTCGACAAA 2 185 217 Antisense
GAACACCAACTCGACAAAAAGGACG 419 349 224 Antisense
Sequence Source Affymetrix Proprietary Database