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[175144_at]

Description AV201703 /REP_DB=TREMBL Accession /GB=AV201703 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk540d4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 99      6grp_total > 98      4grp_total > 25      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 550
1 2 3 4 range
A 432.9
(-3)
P 		540.6
(-1.8)
P 		757.1
(0.7)
P 		963.4
(3)
P 		531
B 534
(-3)
P 		740.2
(2)
P 		633.1
(-0.6)
P 		780.5
(3)
P 		247
C 413.7
(-3)
P 		766.7
(3)
P 		645.7
(0.9)
P 		673.8
(1.4)
P 		353
avr 460.2
(-3) 		682.5
(0.9) 		678.6
(0.8) 		805.9
(3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2319
1 2 3 4 5 6 range
A 562.1
(-2.4)
P 		467
(-2.8)
P 		418.5
(-3)
P 		547
(-2.4)
P 		1557.1
(2)
P 		1788.4
(3)
P 		1370
B 377.4
(-2.9)
P 		487
(-2.6)
P 		333.2
(-3)
P 		697
(-2.1)
P 		1267.5
(-0.6)
P 		2652.2
(3)
P 		2319
C 403
(-3)
P 		447
(-2.8)
P 		521.5
(-2.5)
P 		647.1
(-1.9)
P 		1442
(1.7)
P 		1718.1
(3)
P 		1315
avr 447.5
(-2.9) 		467
(-2.8) 		424.4
(-3) 		630.4
(-2.2) 		1422.2
(0.7) 		2052.9
(3) 		1629
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 157.6
(-0)
P 		117.3
(-3)
P 		197.9
(3)
P 		141
(-1.2)
P 		81
B 170.3
(0.9)
P 		182.8
(3)
P 		146.7
(-3)
P 		166.3
(0.3)
P 		36
C 137
(-1.7)
P 		220.4
(2.7)
P 		225.1
(3)
P 		113.6
(-3)
P 		112
avr 155
(-1.2) 		173.5
(1) 		189.9
(3) 		140.3
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 908
1 2 3 4 5 6 range
A 103.6
(-2.8)
P 		166.1
(-1.8)
P 		91.1
(-3)
P 		138.7
(-2.2)
P 		469.9
(3)
P 		435.4
(2.5)
P 		379
B 131.3
(-2.7)
P 		162.1
(-2.5)
P 		80.9
(-3)
P 		184.6
(-2.3)
P 		515
(-0.1)
P 		989
(3)
P 		908
C 149.4
(-2.7)
P 		136.4
(-2.9)
P 		132.7
(-3)
P 		130.1
(-3)
P 		466.6
(1.5)
P 		575.1
(3)
P 		445
avr 128.1
(-2.7) 		154.9
(-2.4) 		101.6
(-3) 		151.1
(-2.5) 		483.8
(1.1) 		666.5
(3) 		565
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21163
Sequence Type Exemplar sequence
Representative Public ID AV201703 NCBI
Target Description AV201703 /REP_DB=TREMBL Accession /GB=AV201703 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk540d4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066888 NCBI Caenorhabditis elegans T07C4.3b (T07C4.3) mRNA, complete cds. 11/11 None
T07C4.3b ENSEMBL cdna:known chromosome:CEL140:III:10352073:10354979:1 gene:T07C4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176451 2 1 NM_066888 175144_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10354635-10354965(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07C4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82581 Hypothetical protein T07C4.3b [Caenorhabditis elegans] ref|NP_499289.1| T07C4.3b [Caenorhabditis elegans] 0.0
blast CAA82576 Hypothetical protein T07C4.3a [Caenorhabditis elegans] ref|NP_499288.1| T07C4.3a [Caenorhabditis elegans] 0.0
blast CAE56759 Hypothetical protein CBG24562 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175144_AT
tcctcacatccacgtgtcatagtgcttaattggtgctattaaatcgccgctgtaaattat
cagtcctcaccacactctatattttatccagataactttcttttgtatgtgtgtgtgtgt
ttcgagacaattatattctaatttctaattttataccccctcccttctaccgtgtgtggt
tttctagtttacgtgttctcagggtagctgagaacttttcccccattcaacaactagaac
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCACATCCACGTGTCATAGTGC 41 593 39 Antisense
GTGTCATAGTGCTTAATTGGTGCTA 548 485 52 Antisense
TTGGTGCTATTAAATCGCCGCTGTA 614 707 68 Antisense
TGTAAATTATCAGTCCTCACCACAC 551 559 89 Antisense
CTCACCACACTCTATATTTTATCCA 62 229 104 Antisense
GATAACTTTCTTTTGTATGTGTGTG 513 423 129 Antisense
TCCCTTCTACCGTGTGTGGTTTTCT 463 597 199 Antisense
TGTGGTTTTCTAGTTTACGTGTTCT 366 555 213 Antisense
GTTTACGTGTTCTCAGGGTAGCTGA 355 447 225 Antisense
TCAGGGTAGCTGAGAACTTTTCCCC 229 607 237 Antisense
TTCCCCCATTCAACAACTAGAACCA 94 699 256 Antisense
Sequence Source Affymetrix Proprietary Database