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[175142_at]

Description AU115072 /REP_DB=TREMBL Accession /GB=AU115072 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725e4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 42      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 472
1 2 3 4 range
A 511
(1.9)
P 		587
(3)
P 		541.5
(2.4)
P 		165.9
(-3)
P 		421
B 597.3
(3)
P 		522.1
(2)
P 		591.6
(2.9)
P 		148.1
(-3)
P 		449
C 562.3
(2.2)
P 		596.5
(2.7)
P 		619.9
(3)
P 		197
(-3)
P 		423
avr 556.9
(2.6) 		568.5
(2.8) 		584.3
(3) 		170.3
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1113
1 2 3 4 5 6 range
A 728
(0.3)
P 		864.4
(1.2)
P 		1131.6
(3)
P 		865.5
(1.2)
P 		639
(-0.3)
P 		240.6
(-3)
P 		891
B 694.5
(-0.9)
P 		884.5
(0.2)
P 		1353.2
(3)
P 		826.3
(-0.1)
P 		518.4
(-1.9)
P 		331.4
(-3)
P 		1022
C 606.6
(-0.7)
P 		839.8
(1.3)
P 		877.2
(1.6)
P 		1040.7
(3)
P 		437.5
(-2.2)
P 		345.1
(-3)
P 		696
avr 676.4
(-0.3) 		862.9
(1.1) 		1120.7
(3) 		910.8
(1.5) 		531.6
(-1.3) 		305.7
(-3) 		815
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 186.1
(3)
P 		127.4
(0.8)
P 		141.6
(1.3)
P 		24.3
(-3)
P 		162
B 190.5
(3)
P 		128.9
(0.7)
P 		137.1
(1)
P 		31.6
(-3)
P 		159
C 186.1
(2)
P 		171.5
(1.5)
P 		216.1
(3)
P 		33.2
(-3)
P 		183
avr 187.6
(3) 		142.6
(1.3) 		164.9
(2.1) 		29.7
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 134.2
(-1.2)
P 		307.4
(3)
P 		246.4
(1.5)
P 		219.5
(0.9)
P 		192.8
(0.2)
P 		58.6
(-3)
P 		249
B 241.6
(0.5)
P 		294.4
(2)
P 		328.6
(3)
P 		218.9
(-0.2)
P 		210.6
(-0.5)
P 		123.6
(-3)
P 		205
C 224.8
(1.7)
P 		256.3
(3)
P 		223.3
(1.6)
P 		209.3
(1)
P 		141.6
(-1.9)
P 		115.5
(-3)
P 		141
avr 200.2
(0.2) 		286
(3) 		266.1
(2.4) 		215.9
(0.7) 		181.7
(-0.4) 		99.2
(-3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21807
Sequence Type Exemplar sequence
Representative Public ID AU115072 NCBI
Target Description AU115072 /REP_DB=TREMBL Accession /GB=AU115072 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk725e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073388 NCBI Caenorhabditis elegans F17C11.12 (F17C11.12) mRNA, complete cds. 11/11 None
GENEFINDER00000033911 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10936999:10939126:-1 10/11 None
F17C11.12 ENSEMBL cdna:known chromosome:CEL140:V:10936825:10939447:-1 gene:F17C11.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033891 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10936881-10937338(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17C11.12
Entrez Gene 179514 Entrez gene
SwissProt Q9BI96 EMBL-EBI
WormBase CE27130 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21642 Hypothetical protein F17C11.12 [Caenorhabditis elegans] emb|CAC35887.1| Hypothetical protein F17C11.12 [Caenorhabditis elegans] ref|NP_505789.1| F17C11.12 [Caenorhabditis elegans] 0.0
blast CAE75125 Hypothetical protein CBG23053 [Caenorhabditis briggsae] 0.0
blast CAA16411 Hypothetical protein Y51A2D.18 [Caenorhabditis elegans] ref|NP_507620.1| Y51A2D.18 [Caenorhabditis elegans] 1.0E-70
blast CAA16411 Hypothetical protein Y51A2D.18 [Caenorhabditis elegans] ref|NP_507620.1| Y51A2D.18 [Caenorhabditis elegans] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 6.7E-15
Pfam IPR005828 EMBL-EBI General substrate transporter 4.4E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 6.7E-15
Pfam IPR005828 EMBL-EBI General substrate transporter 4.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505789.1 10 44-66,152-170,177-199,209-231,238-255,329-351,356-378,393-415,422-444,488-510
F17C11.12 10 44-66,152-170,177-199,209-231,238-255,329-351,356-378,393-415,422-444,488-510
GENEFINDER00000033911 10 13-32,126-144,151-173,183-205,212-229,303-325,330-352,367-389,396-418,459-481
Sequence
Target Sequence 
>C. ELEGANS:175142_AT
ttgcttcaaatgagttgatgccaactgcaattcgatcaatttcatattcaactgctcagc
tttgctcaagatttggaattgtttttgctccccatgtgttccacttgaacttgtacactg
gtattgactttccagttttgccatacgccatacttttagccatcggattggctgatttca
tatttttcagatttttgattcctgaaacaaaaaacaagcctcttgaggattttattgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTTCAAATGAGTTGATGCCAAC 171 701 13 Antisense
GATGCCAACTGCAATTCGATCAATT 189 415 29 Antisense
AATTTCATATTCAACTGCTCAGCTT 404 175 50 Antisense
AACTGCTCAGCTTTGCTCAAGATTT 200 143 62 Antisense
TCCACTTGAACTTGTACACTGGTAT 127 545 112 Antisense
GGTATTGACTTTCCAGTTTTGCCAT 258 505 132 Antisense
TTTCCAGTTTTGCCATACGCCATAC 552 669 141 Antisense
GCCATACGCCATACTTTTAGCCATC 75 281 152 Antisense
CGCCATACTTTTAGCCATCGGATTG 172 257 158 Antisense
GGATTGGCTGATTTCATATTTTTCA 277 509 177 Antisense
AAGCCTCTTGAGGATTTTATTGTCA 286 149 228 Antisense
Sequence Source Affymetrix Proprietary Database