[Home] | [Total List]

[175141_at]

Description AV192386 /REP_DB=TREMBL Accession /GB=AV192386 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604g4 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 34      6grp_total > 06      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 163.2
(2.8)
P 		167.7
(3)
P 		91.2
(-0.1)
P 		20.3
(-3)
A 		147
B 244.2
(3)
P 		102.5
(-1.2)
P 		81.6
(-1.8)
P 		42.9
(-3)
P 		201
C 207.1
(3)
P 		102.9
(-1.6)
P 		70.2
(-3)
P 		126.6
(-0.5)
P 		137
avr 204.8
(3) 		124.4
(-0.4) 		81
(-2.2) 		63.3
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 339.4
(3)
P 		220.3
(0.5)
P 		179.9
(-0.4)
P 		113.8
(-1.7)
P 		87.5
(-2.3)
P 		54.1
(-3)
M 		285
B 280.6
(3)
P 		241.4
(2)
P 		205.5
(1.1)
P 		122.9
(-0.9)
P 		96.3
(-1.6)
P 		39.7
(-3)
P 		241
C 309.7
(3)
P 		204.4
(0.2)
P 		109.9
(-2.3)
P 		89.9
(-2.8)
P 		85
(-2.9)
P 		81.4
(-3)
P 		228
avr 309.9
(3) 		222
(0.9) 		165.1
(-0.5) 		108.9
(-1.8) 		89.6
(-2.3) 		58.4
(-3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 59.4
(3)
P 		36.4
(0.6)
P 		23.8
(-0.8)
P 		3
(-3)
A 		56
B 77.9
(3)
P 		25.3
(-1.6)
P 		18.9
(-2.1)
P 		9.1
(-3)
P 		69
C 68.6
(3)
P 		29.6
(-1.9)
P 		24.5
(-2.6)
P 		21.3
(-3)
P 		47
avr 68.6
(3) 		30.4
(-1) 		22.4
(-1.8) 		11.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 62.6
(1.5)
P 		78.4
(3)
P 		39.2
(-0.6)
P 		28.9
(-1.6)
P 		26.4
(-1.8)
P 		13.2
(-3)
M 		65
B 97.7
(3)
P 		80.4
(1.7)
P 		49.9
(-0.5)
P 		32.6
(-1.7)
P 		39.1
(-1.2)
P 		14.8
(-3)
P 		83
C 114.8
(3)
P 		62.4
(-0.3)
P 		28
(-2.4)
P 		18.1
(-3)
P 		27.5
(-2.4)
P 		27.2
(-2.4)
P 		97
avr 91.7
(3) 		73.7
(1.5) 		39
(-1.3) 		26.5
(-2.3) 		31
(-2) 		18.4
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20363
Sequence Type Exemplar sequence
Representative Public ID AV192386 NCBI
Target Description AV192386 /REP_DB=TREMBL Accession /GB=AV192386 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk604g4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060434 NCBI Caenorhabditis elegans C35E7.11 (C35E7.11) mRNA, complete cds. 11/11 None
C35E7.11 ENSEMBL cdna:known chromosome:CEL140:I:10852893:10854043:1 gene:C35E7.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013377 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013390 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10853439-10853943(+) 91.27 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.11
Entrez Gene 3565137 Entrez gene
SwissProt Q95X36 EMBL-EBI
WormBase CE27830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71359 Hypothetical protein C35E7.11 [Caenorhabditis elegans] ref|NP_492835.1| C35E7.11 [Caenorhabditis elegans] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:175141_AT
gaagccatcctttgaagaagttcatcagctcattgaagacgacacgtacgacgaggaaga
gctcaagaaagccaatggaggatccgttgttgaggaaaagggttccactgaagttgaagc
tcaagatgagcaagttgccgagagtgaggagcaaccaaatgagccggaagaagaagaaga
agaggctgatgaggaagaaaatgacgaggagtagattttaaattgtctaaagattctctt
tataattataatcaaataccactagatctttccatttattctcaagatctcatctatcat
catattagcgtatgaatcgtaaaatctcaaaaaatgtttgtttgttttttctggaccttt
ttttttagctcaagctcaagcaaaaagctcagtttgctcgctttttgtttattattttca
aatagctcacagttttcaacgtctcgcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCATCCTTTGAAGAAGTTCAT 451 345 32 Antisense
TCAGCTCATTGAAGACGACACGTAC 201 625 56 Antisense
GACACGTACGACGAGGAAGAGCTCA 149 367 72 Antisense
AAGCCAATGGAGGATCCGTTGTTGA 105 147 100 Antisense
AGGGTTCCACTGAAGTTGAAGCTCA 218 45 130 Antisense
GAGCAAGTTGCCGAGAGTGAGGAGC 190 391 159 Antisense
AATACCACTAGATCTTTCCATTTAT 72 173 286 Antisense
TTCCATTTATTCTCAAGATCTCATC 328 701 301 Antisense
AGATCTCATCTATCATCATATTAGC 4 67 316 Antisense
CTCAGTTTGCTCGCTTTTTGTTTAT 332 227 419 Antisense
TCACAGTTTTCAACGTCTCGCAAAC 60 629 458 Antisense
Sequence Source Affymetrix Proprietary Database