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[175140_at]

Description AV203159 /REP_DB=TREMBL Accession /GB=AV203159 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      6grp_highest_nonorm > 80      6grp_total > 90      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 196.4
(-1.2)
P 		104.5
(-3)
A 		147.3
(-2.2)
P 		415.4
(3)
P 		311
B 196.9
(-1.6)
P 		139.5
(-3)
M 		140.4
(-3)
P 		394
(3)
P 		255
C 218.1
(-1.4)
P 		144.5
(-2.6)
A 		118.6
(-3)
P 		481.3
(3)
P 		363
avr 203.8
(-1.5) 		129.5
(-3) 		135.4
(-2.9) 		430.2
(3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 174.5
(-2.3)
P 		219.5
(1.7)
P 		185
(-1.4)
P 		204.9
(0.4)
P 		234.6
(3)
P 		166.9
(-3)
P 		68
B 254
(3)
P 		202.9
(-0.6)
P 		168.8
(-3)
P 		183.2
(-2)
P 		215.3
(0.3)
P 		177.1
(-2.4)
P 		85
C 227.2
(-0)
P 		186.4
(-2)
P 		169.5
(-2.9)
P 		288.3
(3)
P 		166.5
(-3)
P 		175.5
(-2.6)
P 		122
avr 218.6
(2.2) 		202.9
(0.4) 		174.4
(-2.9) 		225.5
(3) 		205.5
(0.7) 		173.2
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 71.5
(3)
P 		22.7
(-3)
A 		38.5
(-1.1)
P 		60.8
(1.7)
P 		49
B 62.8
(0.5)
P 		34.4
(-2.8)
M 		32.5
(-3)
P 		84
(3)
P 		52
C 72.2
(1.6)
P 		41.5
(-3)
A 		41.3
(-3)
P 		81.2
(3)
P 		40
avr 68.8
(2.1) 		32.9
(-3) 		37.4
(-2.4) 		75.3
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 32.2
(-3)
P 		78.1
(3)
P 		40.3
(-1.9)
P 		52
(-0.4)
P 		70.8
(2)
P 		40.6
(-1.9)
P 		46
B 88.4
(3)
P 		67.5
(0.4)
P 		41
(-3)
P 		48.5
(-2.1)
P 		87.5
(2.9)
P 		66.1
(0.2)
P 		47
C 84.2
(3)
P 		56.9
(-1)
P 		43.1
(-3)
P 		58
(-0.8)
P 		53.9
(-1.4)
P 		58.7
(-0.7)
P 		41
avr 68.3
(2.5) 		67.5
(2.3) 		41.5
(-3) 		52.8
(-0.7) 		70.7
(3) 		55.1
(-0.2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22262
Sequence Type Exemplar sequence
Representative Public ID AV203159 NCBI
Target Description AV203159 /REP_DB=TREMBL Accession /GB=AV203159 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076742 NCBI Caenorhabditis elegans M03A8.3 (M03A8.3) mRNA, complete cds. 11/11 None
M03A8.3 ENSEMBL cdna:known chromosome:CEL140:X:6800641:6803658:1 gene:M03A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6803174-6803649(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03A8.3
Entrez Gene 187416 Entrez gene
WormBase CE37133 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509143 M03A8.3 [Caenorhabditis elegans] 0.0
blast CAE65792 Hypothetical protein CBG10896 [Caenorhabditis briggsae] 0.0
blast T16636 hypothetical protein M03A8.3 - Caenorhabditis elegans 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:175140_AT
atggattcggtgacgtctgagaataagatttacacccgtcacaccgacttgtaatttgaa
tttcaattccgattttcttctcctattttcttcttccctttccgcgtttacttcgtcagc
ttcttgtttcaaaatgttcaatgccaacgaatgtactacgcacacaaaagattgatgaat
agataaattcaacttgctttatcgactttatttttatgtactccttcttcaagtttttaa
ttcatttcagccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATTCGGTGACGTCTGAGAATA 535 51 13 Antisense
GAATAAGATTTACACCCGTCACACC 578 323 33 Antisense
ACCCGTCACACCGACTTGTAATTTG 440 89 46 Antisense
TACTTCGTCAGCTTCTTGTTTCAAA 437 645 121 Antisense
GTCAGCTTCTTGTTTCAAAATGTTC 182 467 127 Antisense
AAATGTTCAATGCCAACGAATGTAC 7 121 144 Antisense
GCCAACGAATGTACTACGCACACAA 14 277 155 Antisense
AATTCAACTTGCTTTATCGACTTTA 243 175 198 Antisense
TCGACTTTATTTTTATGTACTCCTT 609 599 214 Antisense
TATGTACTCCTTCTTCAAGTTTTTA 180 651 227 Antisense
CAAGTTTTTAATTCATTTCAGCCCT 517 183 242 Antisense
Sequence Source Affymetrix Proprietary Database