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[175138_s_at]

Description AV177483 /REP_DB=TREMBL Accession /GB=AV177483 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk529d12 : 3prime end, single read.
Cluster 6grp_total > 69      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 119.2
(1.7)
P 		70.8
(-1.1)
A 		38.8
(-3)
A 		140.6
(3)
A 		102
B 100
(1.8)
P 		77.2
(-0.3)
P 		46.6
(-3)
A 		113.4
(3)
A 		67
C 105.6
(0.2)
P 		93.7
(-1.1)
P 		76.2
(-3)
P 		132
(3)
A 		56
avr 108.3
(1.4) 		80.6
(-0.9) 		53.9
(-3) 		128.7
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 18.4
(-2.4)
A 		10.4
(-3)
A 		27.8
(-1.7)
A 		33.9
(-1.2)
A 		34.2
(-1.2)
A 		88.2
(3)
P 		78
B 44
(-0.3)
A 		9.1
(-2.9)
A 		8.1
(-3)
A 		22.3
(-1.9)
A 		48.5
(0)
A 		88.8
(3)
P 		81
C 56.6
(-0.4)
A 		74.9
(1.1)
A 		23.2
(-3)
A 		27.1
(-2.7)
A 		57.5
(-0.3)
A 		99.2
(3)
P 		76
avr 39.7
(-1.3) 		31.5
(-2) 		19.7
(-3) 		27.8
(-2.3) 		46.7
(-0.8) 		92.1
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 43.4
(3)
P 		15.4
(-2)
A 		10.1
(-3)
A 		20.6
(-1.1)
A 		33
B 31.9
(3)
P 		19.1
(-0.6)
P 		10.8
(-3)
A 		24.2
(0.8)
A 		21
C 35
(3)
P 		26.9
(-0.8)
P 		26.5
(-1)
P 		22.3
(-3)
A 		13
avr 36.8
(3) 		20.5
(-1.7) 		15.8
(-3) 		22.4
(-1.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.4
(-3)
A 		3.7
(-2.9)
A 		6.1
(-2.1)
A 		8.6
(-1.3)
A 		10.3
(-0.7)
A 		21.5
(3)
P 		18
B 15.3
(-0.4)
A 		3
(-2.8)
A 		2
(-3)
A 		5.9
(-2.2)
A 		19.7
(0.4)
A 		33.1
(3)
P 		31
C 21
(0.4)
A 		22.8
(0.7)
A 		5.9
(-2.9)
A 		5.5
(-3)
A 		18.6
(-0.2)
A 		33.2
(3)
P 		28
avr 13.2
(-0.9) 		9.8
(-1.8) 		4.7
(-3) 		6.7
(-2.5) 		16.2
(-0.2) 		29.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21985
Sequence Type Exemplar sequence
Representative Public ID AV177483 NCBI
Target Description AV177483 /REP_DB=TREMBL Accession /GB=AV177483 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk529d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070772 NCBI Caenorhabditis elegans F33E11.6 (F33E11.6) mRNA, complete cds. 11/11 None
SNAP00000030181 ENSEMBL cdna:SNAP chromosome:CEL140:V:300187:311364:-1 11/11 None
GENEFINDER00000030185 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:305843:310198:-1 11/11 None
F33E11.6 ENSEMBL cdna:known chromosome:CEL140:V:307322:312726:-1 gene:F33E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:307331-308604(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E11.6
Entrez Gene 3565141 Entrez gene
SwissProt Q965J3 EMBL-EBI
WormBase CE28296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68369 Hypothetical protein F33E11.6 [Caenorhabditis elegans] ref|NP_503173.1| F33E11.6 [Caenorhabditis elegans] 0.0
blast A88925 protein F33E11.3 [imported] - Caenorhabditis elegans 0.0
blast AAK68367 Hypothetical protein F33E11.3 [Caenorhabditis elegans] ref|NP_503171.1| F33E11.3 [Caenorhabditis elegans] 0.0
blast AAK68369 Hypothetical protein F33E11.6 [Caenorhabditis elegans] ref|NP_503173.1| F33E11.6 [Caenorhabditis elegans] 1.0E-168
blast A88925 protein F33E11.3 [imported] - Caenorhabditis elegans 1.0E-168
blast CAE58003 Hypothetical protein CBG01069 [Caenorhabditis briggsae] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.3E-9
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.4E-16
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.3E-9
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.4E-16
Sequence
Target Sequence 
>C. ELEGANS:175138_S_AT
gaagagcttaatcgtttgcctctgggaaccgtcatcgagtcatcccacctctatccagca
gtccgtgagccatcacccccaccgttgaacattgccgagcaggatttggtacgattcgag
agggaagaagccatgagagctcgggaagcaactctcaacacgacgccacaatcgtcaatg
gctcagattaaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCTTAATCGTTTGCCTCTGG 415 339 21 Antisense
TTAATCGTTTGCCTCTGGGAACCGT 431 651 28 Antisense
TGGGAACCGTCATCGAGTCATCCCA 211 553 43 Antisense
CACCGTTGAACATTGCCGAGCAGGA 140 201 100 Antisense
TGCCGAGCAGGATTTGGTACGATTC 420 585 113 Antisense
GGTACGATTCGAGAGGGAAGAAGCC 460 503 128 Antisense
GGGAAGAAGCCATGAGAGCTCGGGA 345 491 142 Antisense
GAGCTCGGGAAGCAACTCTCAACAC 636 385 157 Antisense
TCTCAACACGACGCCACAATCGTCA 293 611 173 Antisense
CACGACGCCACAATCGTCAATGGCT 530 197 179 Antisense
ATCGTCAATGGCTCAGATTAAACAG 607 33 191 Antisense
Sequence Source Affymetrix Proprietary Database