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[175135_at]

Description AV201792 /REP_DB=TREMBL Accession /GB=AV201792 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f10 : 5prime end, single read.
Cluster 6grp_total > 06      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 9.5
(-2.3)
A 		25.7
(0.3)
A 		5.1
(-3)
A 		42.4
(3)
A 		37
B 5.7
(-2.8)
A 		16.9
(-1.4)
A 		3.7
(-3)
A 		52.8
(3)
P 		49
C 22.1
(2.2)
A 		1.9
(-3)
A 		8.1
(-1.4)
A 		25
(3)
A 		23
avr 12.4
(-1.8) 		14.8
(-1.4) 		5.6
(-3) 		40.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6
(-2.3)
A 		13.8
(-0.9)
A 		22.8
(0.7)
A 		4.1
(-2.6)
A 		35.5
(3)
A 		1.8
(-3)
A 		34
B 37.9
(3)
P 		29.6
(1.6)
A 		8
(-2.2)
A 		4.1
(-2.9)
A 		3.4
(-3)
A 		16.4
(-0.7)
A 		35
C 37
(3)
P 		15.6
(-2.3)
A 		25.1
(0)
A 		17.3
(-1.9)
A 		12.8
(-3)
A 		20.8
(-1)
A 		24
avr 27
(3) 		19.7
(0.6) 		18.6
(0.3) 		8.5
(-3) 		17.2
(-0.2) 		13
(-1.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(-0.3)
A 		5.6
(2.3)
A 		1.3
(-3)
A 		6.2
(3)
A 		5
B 1.8
(-2.4)
A 		4.2
(-1.1)
A 		0.8
(-3)
A 		11.3
(3)
P 		11
C 7.3
(3)
A 		0.5
(-3)
A 		2.8
(-1)
A 		4.2
(0.3)
A 		7
avr 4.2
(-0.2) 		3.4
(-1.1) 		1.6
(-3) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.6)
A 		4.9
(-0.4)
A 		5
(-0.3)
A 		1
(-2.7)
A 		10.7
(3)
A 		0.4
(-3)
A 		10
B 13.2
(3)
P 		9.8
(1.3)
A 		1.9
(-2.6)
A 		1.1
(-3)
A 		1.4
(-2.9)
A 		6.1
(-0.5)
A 		12
C 13.7
(3)
P 		4.8
(-2.2)
A 		6.4
(-1.3)
A 		3.5
(-3)
A 		4.1
(-2.6)
A 		7
(-0.9)
A 		10
avr 9.3
(3) 		6.5
(0.7) 		4.4
(-1) 		1.9
(-3) 		5.4
(-0.2) 		4.5
(-0.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21452
Sequence Type Exemplar sequence
Representative Public ID AV201792 NCBI
Target Description AV201792 /REP_DB=TREMBL Accession /GB=AV201792 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV201792
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV201792 AV201792 /REP_DB=TREMBL Accession /GB=AV201792 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f10 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11327184-11327521(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175135_AT
aattggcatcaagtgtcgtatcataaattctgaaacttgaaataatctacgatttcagaa
ttctcaaaatcaaacctccgtgttttatcgttttccattgctcttggggaaatcgataca
tttaatatcaactgagcttcttcttgatttccagagcttctcgatcgcagtaaaaacatc
aatataatgatttgaaagaagattccataaattaaaattcgaaaaactataggttttgac
ttttgattccagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCATCAAGTGTCGTATCATA 536 179 23 Antisense
GTGTCGTATCATAAATTCTGAAACT 286 487 35 Antisense
TAATCTACGATTTCAGAATTCTCAA 438 635 65 Antisense
GAATTCTCAAAATCAAACCTCCGTG 562 323 80 Antisense
CTCCGTGTTTTATCGTTTTCCATTG 374 223 98 Antisense
CGTGTTTTATCGTTTTCCATTGCTC 406 245 101 Antisense
TCCATTGCTCTTGGGGAAATCGATA 643 589 116 Antisense
TTAATATCAACTGAGCTTCTTCTTG 53 683 144 Antisense
CTTCTTCTTGATTTCCAGAGCTTCT 426 221 159 Antisense
TGATTTCCAGAGCTTCTCGATCGCA 39 563 167 Antisense
TAGGTTTTGACTTTTGATTCCAGAG 491 653 252 Antisense
Sequence Source Affymetrix Proprietary Database