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[175134_at]

Description AV202662 /REP_DB=TREMBL Accession /GB=AV202662 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553c12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 90      6grp_total > 14      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 204
(-0.5)
P 		309.7
(3)
P 		184
(-1.2)
P 		129.1
(-3)
P 		181
B 171.8
(-0.3)
P 		254.9
(3)
P 		184.2
(0.2)
P 		103.1
(-3)
P 		152
C 188.4
(0.8)
P 		238.1
(3)
P 		176.1
(0.3)
P 		100.2
(-3)
P 		138
avr 188.1
(-0) 		267.6
(3) 		181.4
(-0.3) 		110.8
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 184
(3)
P 		177.7
(2.7)
P 		172.8
(2.4)
P 		134
(0.4)
P 		107.3
(-1)
P 		68.4
(-3)
P 		116
B 289.9
(3)
P 		225.9
(1)
P 		125.9
(-2.2)
P 		175.4
(-0.6)
P 		113
(-2.6)
P 		99.1
(-3)
P 		191
C 203.8
(3)
P 		201.6
(2.9)
P 		118.9
(-1.5)
P 		102.8
(-2.3)
P 		89.4
(-3)
P 		107.1
(-2.1)
P 		114
avr 225.9
(3) 		201.7
(1.9) 		139.2
(-0.9) 		137.4
(-1) 		103.2
(-2.5) 		91.5
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 74.3
(3)
P 		67.2
(2.2)
P 		48.1
(0.2)
P 		18.9
(-3)
P 		55
B 54.8
(1.8)
P 		63
(3)
P 		42.7
(0)
P 		22
(-3)
P 		41
C 62.4
(2.3)
P 		68.4
(3)
P 		61.4
(2.2)
P 		16.9
(-3)
P 		52
avr 63.8
(2.7) 		66.2
(3) 		50.7
(1) 		19.3
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 33.9
(-0.8)
P 		63.2
(3)
P 		37.6
(-0.3)
P 		34
(-0.8)
P 		32.4
(-1)
P 		16.7
(-3)
P 		47
B 100.9
(3)
P 		75.2
(0.8)
P 		30.6
(-3)
P 		46.4
(-1.7)
P 		45.9
(-1.7)
P 		37
(-2.5)
P 		70
C 75.5
(3)
P 		61.5
(1.5)
P 		30.3
(-1.9)
P 		20.7
(-3)
P 		28.9
(-2.1)
P 		35.9
(-1.3)
P 		55
avr 70.1
(3) 		66.6
(2.5) 		32.8
(-2.6) 		33.7
(-2.4) 		35.7
(-2.1) 		29.9
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22086
Sequence Type Exemplar sequence
Representative Public ID AV202662 NCBI
Target Description AV202662 /REP_DB=TREMBL Accession /GB=AV202662 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553c12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076994 NCBI Caenorhabditis elegans F13B9.6 (F13B9.6) mRNA, complete cds. 11/11 A 
F13B9.6 ENSEMBL cdna:known chromosome:CEL140:X:8262378:8270959:-1 gene:F13B9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009677 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8262437-8262902(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B9.6
Entrez Gene 181081 Entrez gene
SwissProt Q19379 EMBL-EBI
WormBase CE37101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39227 Hypothetical protein F13B9.6 [Caenorhabditis elegans] ref|NP_509395.2| F13B9.6 [Caenorhabditis elegans] 0.0
blast CAE74867 Hypothetical protein CBG22726 [Caenorhabditis briggsae] 1.0E-110
blast CAE74866 Hypothetical protein CBG22725 [Caenorhabditis briggsae] 4.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 9.4E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509395.2 1 343-365
F13B9.6 1 343-365
Sequence
Target Sequence 
>C. ELEGANS:175134_AT
gcccttgtatcgtccgaggactacgctcgcccggcacattgctattcacaacctgcgctc
attgctacctgcactttcgtttttgtgataactgcactcttggtttcgatggttcacgtg
gtttatcggcgatggacaaagtccgacaagacaagcagtataaatgacaacgacagcgtc
gattcttctaccatttcataattcattactctcatttcattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCTTGTATCGTCCGAGGACTACG 297 285 40 Antisense
GCACATTGCTATTCACAACCTGCGC 249 317 73 Antisense
GCTACCTGCACTTTCGTTTTTGTGA 155 303 103 Antisense
GTGATAACTGCACTCTTGGTTTCGA 50 485 124 Antisense
TGCACTCTTGGTTTCGATGGTTCAC 605 577 132 Antisense
GGTTTCGATGGTTCACGTGGTTTAT 509 503 141 Antisense
GTTCACGTGGTTTATCGGCGATGGA 620 443 151 Antisense
GGCGATGGACAAAGTCCGACAAGAC 576 539 167 Antisense
GACAACGACAGCGTCGATTCTTCTA 586 365 205 Antisense
GATTCTTCTACCATTTCATAATTCA 34 431 220 Antisense
AATTCATTACTCTCATTTCATTCCA 107 177 239 Antisense
Sequence Source Affymetrix Proprietary Database