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[175132_at]

Description AU111704 /REP_DB=TREMBL Accession /GB=AU111704 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733h12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 81      6grp_total > 44      4grp_total > 56      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 240.7
(0.4)
P 		290
(3)
P 		263.7
(1.6)
P 		176.9
(-3)
P 		113
B 220.2
(-2.5)
P 		249.9
(-0.8)
P 		318.1
(3)
P 		211.1
(-3)
P 		107
C 241.9
(-1.1)
P 		198
(-3)
P 		339.3
(3)
P 		204.5
(-2.7)
P 		141
avr 234.3
(-1) 		246
(-0.3) 		307
(3) 		197.5
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 198.8
(-2)
P 		206.5
(-1.8)
P 		449.6
(3)
P 		302.5
(0.1)
P 		145.9
(-3)
P 		246.3
(-1)
P 		304
B 334
(-0.1)
P 		331.8
(-0.2)
P 		463.4
(3)
P 		213
(-3)
P 		251.9
(-2.1)
P 		340
(0)
P 		250
C 391.6
(3)
P 		298.9
(-0.2)
P 		218.5
(-3)
P 		274.9
(-1)
P 		234.6
(-2.4)
P 		230.7
(-2.6)
P 		173
avr 308.1
(0.5) 		279.1
(-0.5) 		377.2
(3) 		263.5
(-1.1) 		210.8
(-3) 		272.3
(-0.8) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 87.6
(3)
P 		63
(0.6)
P 		68.9
(1.2)
P 		25.9
(-3)
P 		62
B 70.2
(2.3)
P 		61.7
(0.5)
P 		73.7
(3)
P 		45
(-3)
P 		29
C 80.1
(0.3)
P 		56.9
(-1.4)
P 		118.3
(3)
P 		34.5
(-3)
P 		84
avr 79.3
(2.1) 		60.5
(-0.1) 		87
(3) 		35.1
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 36.6
(-3)
P 		73.4
(0.6)
P 		97.9
(3)
P 		76.7
(0.9)
P 		44
(-2.3)
P 		60
(-0.7)
P 		61
B 116.2
(2.1)
P 		110.4
(1.6)
P 		112.5
(1.8)
P 		56.4
(-3)
P 		102.3
(0.9)
P 		126.8
(3)
P 		70
C 145.1
(3)
P 		91.2
(-0.6)
P 		55.6
(-3)
P 		55.3
(-3)
P 		75.9
(-1.6)
P 		77.2
(-1.5)
P 		90
avr 99.3
(3) 		91.7
(1.8) 		88.7
(1.3) 		62.8
(-3) 		74.1
(-1.1) 		88
(1.1) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20410
Sequence Type Exemplar sequence
Representative Public ID AU111704 NCBI
Target Description AU111704 /REP_DB=TREMBL Accession /GB=AU111704 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733h12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060318 NCBI Caenorhabditis elegans F45H11.5 (F45H11.5) mRNA, complete cds. 11/11 None
SNAP00000042272 ENSEMBL cdna:SNAP chromosome:CEL140:I:10389204:10390004:1 9/11 None
GENEFINDER00000042278 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10389204:10390004:1 9/11 None
F45H11.5 ENSEMBL cdna:known chromosome:CEL140:I:10389204:10390097:1 gene:F45H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10389203-10390018(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45H11.5
Entrez Gene 172913 Entrez gene
SwissProt Q95ZT5 EMBL-EBI
WormBase CE27165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42299 Hypothetical protein F45H11.5 [Caenorhabditis elegans] ref|NP_492719.1| F45H11.5 [Caenorhabditis elegans] 2.0E-45
blast CAE58930 Hypothetical protein CBG02195 [Caenorhabditis briggsae] 9.0E-41
blast AAW45829 metal ion transporter, putative [Cryptococcus neoformans var. neoformans JEC21] gb|EAL18535.1| hypothetical protein CNBJ1770 [Cryptococcus neoformans var. neoformans B-3501A] ref|XP_567346.1| metal ion transporter, putative [Cryptococcus neoformans var. neoformans JEC21] 4.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR010625 EMBL-EBI CHCH 1.1E-11
Sequence
Target Sequence 
>C. ELEGANS:175132_AT
gatcacgagggaacttgcaaattagaaatgctcaactacatggtgtgtctacacgagaag
aagcaacaaaacagtgagtgtcgatcaactgcaaaagattatttcgaatgtcgaatgaat
catggattaatggataaagaggaatggcagaaactaggctacggagatgccaagcagatc
tcaaagtgattcttgtttaattttcccctcaatttcttatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACGAGGGAACTTGCAAATTAG 170 417 13 Antisense
GCAAATTAGAAATGCTCAACTACAT 210 309 29 Antisense
CTCAACTACATGGTGTGTCTACACG 556 227 43 Antisense
GTGTGTCTACACGAGAAGAAGCAAC 419 485 55 Antisense
GAAGCAACAAAACAGTGAGTGTCGA 697 337 72 Antisense
GTGAGTGTCGATCAACTGCAAAAGA 532 483 86 Antisense
TTCGAATGTCGAATGAATCATGGAT 337 693 115 Antisense
GAATGGCAGAAACTAGGCTACGGAG 210 333 154 Antisense
GGCTACGGAGATGCCAAGCAGATCT 449 537 169 Antisense
AGCAGATCTCAAAGTGATTCTTGTT 636 77 185 Antisense
TAATTTTCCCCTCAATTTCTTATGT 190 633 210 Antisense
Sequence Source Affymetrix Proprietary Database