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[175131_at]

Description AV189226 /REP_DB=TREMBL Accession /GB=AV189226 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533g10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 53      4grp_high_8_8 > 16      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 160.9
(3)
P 		159
(2.2)
P 		146.5
(-3)
P 		151.2
(-1)
P 		14
B 202.9
(3)
P 		137.5
(-3)
P 		141.8
(-2.6)
P 		175.2
(0.5)
P 		65
C 232.2
(3)
P 		136.2
(-3)
P 		144.2
(-2.5)
P 		190.8
(0.4)
P 		96
avr 198.7
(3) 		144.2
(-3) 		144.2
(-3) 		172.4
(0.1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 173.1
(-1.9)
P 		147.4
(-3)
P 		242.7
(1.2)
P 		208.6
(-0.3)
P 		237.4
(1)
P 		283
(3)
P 		136
B 146
(-3)
P 		156.7
(-2.7)
P 		235.2
(-0.8)
P 		221.3
(-1.2)
P 		248.2
(-0.5)
P 		393.8
(3)
P 		248
C 154.2
(-3)
P 		219.5
(-1.4)
P 		206.3
(-1.7)
P 		189
(-2.1)
P 		213.7
(-1.5)
P 		392
(3)
P 		238
avr 157.8
(-3) 		174.5
(-2.5) 		228.1
(-0.9) 		206.3
(-1.5) 		233.1
(-0.7) 		356.3
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 58.6
(3)
P 		34.5
(-1)
P 		38.3
(-0.3)
P 		22.1
(-3)
P 		37
B 64.7
(3)
P 		33.9
(-2.8)
P 		32.9
(-3)
P 		37.3
(-2.2)
P 		32
C 76.8
(3)
P 		39.2
(-2.1)
P 		50.3
(-0.6)
P 		32.2
(-3)
P 		45
avr 66.7
(3) 		35.9
(-2.1) 		40.5
(-1.3) 		30.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 31.9
(-3)
P 		52.4
(0.1)
P 		52.9
(0.2)
P 		52.9
(0.2)
P 		71.7
(3)
P 		68.9
(2.6)
P 		40
B 50.8
(-3)
P 		52.2
(-2.9)
P 		57.1
(-2.6)
P 		58.6
(-2.5)
P 		100.9
(0.1)
P 		146.9
(3)
P 		96
C 57.1
(-1.8)
P 		67
(-1.1)
P 		52.5
(-2.1)
P 		38
(-3)
P 		69.2
(-1)
P 		131.2
(3)
P 		93
avr 46.6
(-3) 		57.2
(-2.1) 		54.2
(-2.3) 		49.8
(-2.7) 		80.6
(-0) 		115.7
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21456
Sequence Type Exemplar sequence
Representative Public ID AV189226 NCBI
Target Description AV189226 /REP_DB=TREMBL Accession /GB=AV189226 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk533g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069933 NCBI Caenorhabditis elegans C42C1.13 (C42C1.13) mRNA, complete cds. 11/11 None
SNAP00000027937 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12278518:12279470:1 11/11 None
GENEFINDER00000027956 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12278518:12279470:1 11/11 None
C42C1.13 ENSEMBL cdna:known chromosome:CEL140:IV:12278518:12279470:1 gene:C42C1.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12279165-12279445(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.13
Entrez Gene 178175 Entrez gene
SwissProt Q95X52 EMBL-EBI
WormBase CE26910 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260098_AT expressed protein at
CANINE_2:CFAAFFX.21999.1.S1_AT similar to Protein C14orf138 homolog cfa
CHICKEN:GGA.8940.1.S1_AT similar to chromosome 14 open reading frame 138 gga
CHICKEN:GGA.8940.2.S1_A_AT similar to chromosome 14 open reading frame 138 gga
CHICKEN:GGAAFFX.23851.1.S1_AT similar to chromosome 14 open reading frame 138 gga
MOUSE430_2:1455726_AT gene model 71, (NCBI) mm
MOE430B:1455726_AT gene model 71, (NCBI) mm
MU19KSUBB:TC31919_AT gene model 71, (NCBI) mm
RAE230B:1378568_A_AT similar to chromosome 14 open reading frame 138 (predicted) rn
RAT230_2:1378568_A_AT similar to chromosome 14 open reading frame 138 (predicted) rn
RAE230B:1392104_AT Similar to chromosome 14 open reading frame 138 (predicted) rn
RAT230_2:1392104_AT Similar to chromosome 14 open reading frame 138 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_502334 C42C1.13 [Caenorhabditis elegans] gb|AAK72291.1| Hypothetical protein C42C1.13 [Caenorhabditis elegans] 1.0E-142
blast NP_502334 C42C1.13 [Caenorhabditis elegans] gb|AAK72291.1| Hypothetical protein C42C1.13 [Caenorhabditis elegans] 1.0E-106
blast CAE62216 Hypothetical protein CBG06267 [Caenorhabditis briggsae] 1.0E-78
blast CAE62216 Hypothetical protein CBG06267 [Caenorhabditis briggsae] 9.0E-51
blast AAH91601 MGC97646 protein [Xenopus tropicalis] ref|NP_001025637.1| MGC97646 protein [Xenopus tropicalis] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175131_AT
caaagttcaagttctcgactggacaaaggacagaataccggaaggactggatatggttct
ggcaattgattgtgtatactacaacagcactatagatccgttgataaccttgttgaatga
ttgtgatgcaaaggaaattatggtggtcagcgaggaaagggacatcggagaggctcattt
ggctcaaaaatcatttttcaaggatattcaaaagttcttccgcctggagctaattcctca
gaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGTTCAAGTTCTCGACTGGACA 312 193 17 Antisense
GGACAGAATACCGGAAGGACTGGAT 569 525 44 Antisense
GGACTGGATATGGTTCTGGCAATTG 619 523 60 Antisense
ACTACAACAGCACTATAGATCCGTT 324 99 94 Antisense
TAGATCCGTTGATAACCTTGTTGAA 255 651 109 Antisense
GGAAATTATGGTGGTCAGCGAGGAA 421 527 149 Antisense
GAAAGGGACATCGGAGAGGCTCATT 347 361 171 Antisense
CATCGGAGAGGCTCATTTGGCTCAA 211 213 179 Antisense
ATATTCAAAAGTTCTTCCGCCTGGA 72 13 220 Antisense
AAAGTTCTTCCGCCTGGAGCTAATT 126 121 227 Antisense
CCGCCTGGAGCTAATTCCTCAGAAG 254 263 236 Antisense
Sequence Source Affymetrix Proprietary Database