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[175130_s_at]

Description AV201725 /REP_DB=TREMBL Accession /GB=AV201725 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk540g11 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 61      6grp_total > 55      4grp_total > 12      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 96.2
(-2.8)
P 		136.6
(3)
P 		94.7
(-3)
A 		126.6
(1.6)
P 		42
B 104.5
(1.3)
P 		58.8
(-2.2)
A 		48
(-3)
A 		127.7
(3)
P 		80
C 75.2
(-1.3)
A 		39.4
(-3)
A 		54.2
(-2.3)
A 		168.3
(3)
P 		129
avr 92
(-0.9) 		78.3
(-2) 		65.6
(-3) 		140.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 102.2
(1.1)
A 		92.7
(0.2)
A 		113.4
(2.1)
P 		122.7
(3)
P 		58.8
(-3)
P 		103.4
(1.2)
P 		64
B 102.2
(0.4)
P 		103.3
(0.5)
P 		95.3
(-0.3)
P 		67.3
(-3)
A 		102.9
(0.4)
P 		129.6
(3)
P 		62
C 102.8
(-0.2)
P 		110.1
(0.7)
P 		127
(3)
P 		116.2
(1.6)
M 		113.1
(1.1)
P 		82.1
(-3)
P 		45
avr 102.4
(0.2) 		102
(0.1) 		111.9
(3) 		102.1
(0.1) 		91.6
(-3) 		105
(1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 35
(3)
P 		29.7
(1.1)
P 		24.7
(-0.7)
A 		18.5
(-3)
P 		17
B 33.3
(3)
P 		14.5
(-2.1)
A 		11.1
(-3)
A 		27.2
(1.4)
P 		22
C 24.9
(1.8)
A 		11.3
(-3)
A 		18.9
(-0.3)
A 		28.4
(3)
P 		17
avr 31.1
(3) 		18.5
(-2.9) 		18.2
(-3) 		24.7
(0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18.8
(-2.6)
A 		33
(3)
A 		24.7
(-0.3)
P 		31.1
(2.3)
P 		17.7
(-3)
P 		25.2
(-0.1)
P 		15
B 35.5
(0.5)
P 		34.4
(0.3)
P 		23.1
(-2)
P 		17.8
(-3)
A 		41.8
(1.7)
P 		48.3
(3)
P 		31
C 38.1
(3)
P 		33.6
(1.2)
P 		32.3
(0.6)
P 		23.4
(-3)
M 		36.6
(2.4)
P 		27.5
(-1.3)
P 		15
avr 30.8
(1.2) 		33.7
(3) 		26.7
(-1.4) 		24.1
(-3) 		32
(1.9) 		33.7
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175130_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20444
Sequence Type Exemplar sequence
Representative Public ID AV201725 NCBI
Target Description AV201725 /REP_DB=TREMBL Accession /GB=AV201725 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk540g11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058370 NCBI Caenorhabditis elegans Y18H1A.2 (Y18H1A.2) mRNA, complete cds. 11/11 None
SNAP00000022332 ENSEMBL cdna:SNAP chromosome:CEL140:I:693487:715853:-1 10/11 None
GENEFINDER00000022383 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:695068:698325:-1 11/11 None
Y18H1A.2 ENSEMBL cdna:known chromosome:CEL140:I:694991:698330:-1 gene:Y18H1A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:695000-695317(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.2
Entrez Gene 171662 Entrez gene
SwissProt Q9BL93 EMBL-EBI
WormBase CE21438 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592280_AT similar to leukocyte receptor cluster (LRC) member 1 cfa
CANINE:1586718_AT similar to leukocyte receptor cluster (LRC) member 1 cfa
CANINE_2:CFA.6303.1.A1_AT similar to leukocyte receptor cluster (LRC) member 1 cfa
CANINE_2:CFAAFFX.4921.1.S1_AT similar to leukocyte receptor cluster (LRC) member 1 cfa
DROSOPHILA_2:1633680_AT dm
DROSGENOME1:149629_AT dm
U133_X3P:HS.172407.0.S1_3P_AT leukocyte receptor cluster (LRC) member 1 hs
HG-U133_PLUS_2:232018_AT leukocyte receptor cluster (LRC) member 1 hs
HG-U133B:232018_AT leukocyte receptor cluster (LRC) member 1 hs
HG-U95E:84668_AT leukocyte receptor cluster (LRC) member 1 hs
RAE230A:1390365_AT leukocyte receptor cluster (LRC) member 1 (predicted) rn
RAT230_2:1390365_AT leukocyte receptor cluster (LRC) member 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490772 Y18H1A.3 [Caenorhabditis elegans] gb|AAK21507.1| Hypothetical protein Y18H1A.3 [Caenorhabditis elegans] 0.0
blast CAE61317 Hypothetical protein CBG05152 [Caenorhabditis briggsae] 0.0
blast NP_490771 Y18H1A.2 [Caenorhabditis elegans] gb|AAK21506.1| Hypothetical protein Y18H1A.2 [Caenorhabditis elegans] 1.0E-96
blast NP_490771 Y18H1A.2 [Caenorhabditis elegans] gb|AAK21506.1| Hypothetical protein Y18H1A.2 [Caenorhabditis elegans] 3.0E-87
blast CAE61316 Hypothetical protein CBG05151 [Caenorhabditis briggsae] 1.0E-58
blast CAE61316 Hypothetical protein CBG05151 [Caenorhabditis briggsae] 6.0E-48
blast XP_393720 PREDICTED: similar to ENSANGP00000002447 [Apis mellifera] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000331 EMBL-EBI Rap/ran-GAP 1.3E-12
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 9.4E-5
Sequence
Target Sequence 
>C. ELEGANS:175130_S_AT
ccaccgtgatagctctgaagaacgtcaactcgaagaggaatacgatcgagaacgacggca
gaagctggcgagcatgcgagacgagcgtctgaaacgggaacgagtcgagaaagcgagagc
ccatgctttgctacatcccgaggaaattgagctgctgcagaaacgaaaagccgccgagga
ttcggaggagaagcgtggaaagaagaaaaagtacaactcgcaatttaatcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCGTGATAGCTCTGAAGAACGT 42 273 13 Antisense
AGCTCTGAAGAACGTCAACTCGAAG 156 81 23 Antisense
GGAATACGATCGAGAACGACGGCAG 308 527 49 Antisense
GACGGCAGAAGCTGGCGAGCATGCG 251 377 66 Antisense
GCGAGCATGCGAGACGAGCGTCTGA 106 291 80 Antisense
GAGCGTCTGAAACGGGAACGAGTCG 121 385 95 Antisense
GAGTCGAGAAAGCGAGAGCCCATGC 149 399 114 Antisense
TGCTTTGCTACATCCCGAGGAAATT 226 577 136 Antisense
TCCCGAGGAAATTGAGCTGCTGCAG 156 597 148 Antisense
CCGAGGATTCGGAGGAGAAGCGTGG 128 265 186 Antisense
AGTACAACTCGCAATTTAATCCTGA 147 63 222 Antisense
Sequence Source Affymetrix Proprietary Database