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[175129_at]

Description AV201987 /REP_DB=TREMBL Accession /GB=AV201987 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544c12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 81      6grp_total > 83      4grp_total > 08      6grp_highest_sub > 05      6grp_cgc > 98      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 561
1 2 3 4 range
A 100.7
(-3)
P 		177.2
(-2.2)
P 		330.5
(-0.5)
P 		661.3
(3)
P 		561
B 213.7
(-3)
P 		222.7
(-2.3)
P 		271
(1.7)
P 		287.4
(3)
P 		74
C 160.9
(-3)
P 		207.9
(-2.4)
P 		281.9
(-1.3)
P 		600.5
(3)
P 		440
avr 158.4
(-3) 		202.6
(-2.3) 		294.5
(-0.7) 		516.4
(3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 190.8
(-3)
P 		252.3
(-1.5)
P 		434.9
(3)
P 		232
(-2)
P 		331
(0.4)
P 		250.2
(-1.5)
P 		244
B 270.6
(-0.7)
P 		288.7
(-0)
P 		214.2
(-3)
P 		364.3
(3)
P 		351
(2.5)
P 		288.2
(-0)
P 		150
C 253.1
(-0.8)
P 		308.4
(2.3)
P 		212.7
(-3)
P 		307
(2.2)
P 		321.4
(3)
P 		253.9
(-0.7)
P 		109
avr 238.2
(-3) 		283.1
(-0.2) 		287.3
(0.1) 		301.1
(0.9) 		334.5
(3) 		264.1
(-1.4) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 36.7
(-3)
P 		38.5
(-2.8)
P 		86.4
(2)
P 		96.8
(3)
P 		60
B 68.2
(3)
P 		55
(-3)
P 		62.8
(0.5)
P 		61.2
(-0.2)
P 		13
C 53.3
(-3)
P 		59.8
(-2.2)
P 		98.2
(2.6)
P 		101.3
(3)
P 		48
avr 52.7
(-2.7) 		51.1
(-3) 		82.5
(2.3) 		86.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 35.2
(-3)
P 		89.7
(2.1)
P 		94.7
(2.5)
P 		58.8
(-0.8)
P 		99.9
(3)
P 		60.9
(-0.6)
P 		65
B 94.1
(-0.2)
P 		96.1
(-0.1)
P 		52
(-3)
P 		96.5
(-0.1)
P 		142.6
(3)
P 		107.5
(0.7)
P 		91
C 93.8
(1.8)
P 		94.1
(1.8)
P 		54.1
(-3)
P 		61.7
(-2.1)
P 		104
(3)
P 		85
(0.7)
P 		50
avr 74.4
(-2.1) 		93.3
(0.3) 		66.9
(-3) 		72.3
(-2.3) 		115.5
(3) 		84.5
(-0.8) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21196
Sequence Type Exemplar sequence
Representative Public ID AV201987 NCBI
Target Description AV201987 /REP_DB=TREMBL Accession /GB=AV201987 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk544c12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066465 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-96) (pqn-96) mRNA, complete cds. 11/11 None
ZK1236.6 ENSEMBL cdna:known chromosome:CEL140:III:8437998:8439323:-1 gene:ZK1236.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8438043-8438321(-) 30.94 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-96
Ensembl ZK1236.6
Entrez Gene 176193 Entrez gene
SwissProt P34622 EMBL-EBI
WormBase CE00383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28189 Prion-like-(q/n-rich)-domain-bearing protein protein 96 [Caenorhabditis elegans] ref|NP_498866.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-96) [Caenorhabditis elegans] sp|P34622|YO86_CAEEL Hypothetical protein ZK1236.6 in chromosome III 2.0E-39
blast CAE71255 Hypothetical protein CBG18135 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:175129_AT
taagcatttctttaattattctcattcaattttcatatataaaaccagccgtggaccgca
cctacgcgcggcccccaacttttttgagaaaacacattagatatacggtgtctatcgcgg
acctcgatcgatgtctgctgcgcatttagcataaggtttcccaaaatttcgttgctctgt
tcagagatcaaactacatagggacagaaggacacgcgctttatatatagtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCATTTCTTTAATTATTCTCAT 627 637 13 Antisense
ATTCTCATTCAATTTTCATATATAA 209 11 30 Antisense
ATATATAAAACCAGCCGTGGACCGC 485 11 47 Antisense
GATATACGGTGTCTATCGCGGACCT 636 425 112 Antisense
GATCGATGTCTGCTGCGCATTTAGC 21 419 138 Antisense
GCGCATTTAGCATAAGGTTTCCCAA 466 287 152 Antisense
GGTTTCCCAAAATTTCGTTGCTCTG 52 505 167 Antisense
CAAAATTTCGTTGCTCTGTTCAGAG 328 189 174 Antisense
GCTCTGTTCAGAGATCAAACTACAT 657 299 186 Antisense
AGGGACAGAAGGACACGCGCTTTAT 162 59 211 Antisense
AGGACACGCGCTTTATATATAGTAA 210 55 220 Antisense
Sequence Source Affymetrix Proprietary Database