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[175128_s_at]

Description AV196483 /REP_DB=TREMBL Accession /GB=AV196483 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654g10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 46      6grp_total > 44      4grp_total > 48      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1297
1 2 3 4 range
A 2838.7
(-3)
P 		3134.4
(-0.5)
P 		3535.9
(3)
P 		3317.8
(1.1)
P 		697
B 2519.9
(-3)
P 		3233.5
(0.3)
P 		3817.1
(3)
P 		2788.8
(-1.8)
P 		1297
C 2705.4
(-2.4)
P 		3066.4
(0.3)
P 		3423.9
(3)
P 		2624
(-3)
P 		800
avr 2688
(-3) 		3144.8
(0) 		3592.3
(3) 		2910.2
(-1.5) 		904

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2188
1 2 3 4 5 6 range
A 2270.9
(-3)
P 		2968.1
(-0.9)
P 		4237.9
(3)
P 		2970.3
(-0.9)
P 		2331.7
(-2.8)
P 		2642.9
(-1.9)
P 		1967
B 3478.4
(0.1)
P 		3397.2
(-0.1)
P 		4458.7
(3)
P 		2405.7
(-3)
P 		2940.4
(-1.4)
P 		2731.3
(-2)
P 		2053
C 3339
(2.9)
P 		3238.3
(2.3)
P 		3324.4
(2.8)
P 		2330.7
(-3)
P 		3122.9
(1.6)
P 		3364.1
(3)
P 		1033
avr 3029.4
(-1.1) 		3201.2
(-0.4) 		4007
(3) 		2568.9
(-3) 		2798.3
(-2) 		2912.8
(-1.6) 		1438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 751
1 2 3 4 range
A 1033.6
(3)
P 		680.4
(-0.9)
P 		924.3
(1.8)
P 		485.7
(-3)
P 		548
B 803.6
(1.3)
P 		798.6
(1.2)
P 		884.5
(3)
P 		594.3
(-3)
P 		290
C 895.6
(0.6)
P 		881.6
(0.5)
P 		1193.3
(3)
P 		442.4
(-3)
P 		751
avr 910.9
(1.9) 		786.9
(0.4) 		1000.7
(3) 		507.5
(-3) 		493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 819
1 2 3 4 5 6 range
A 418.6
(-3)
P 		1055.6
(3)
P 		922.9
(1.8)
P 		753.3
(0.2)
P 		703.6
(-0.3)
P 		643.5
(-0.9)
P 		637
B 1210.3
(3)
P 		1130.8
(2.2)
P 		1082.7
(1.7)
P 		637.2
(-3)
P 		1194.7
(2.8)
P 		1018.5
(1)
P 		573
C 1237.6
(3)
P 		988.1
(1.1)
P 		846.1
(-0.1)
P 		468.7
(-3)
P 		1010.5
(1.2)
P 		1126.1
(2.1)
P 		769
avr 955.5
(1.6) 		1058.2
(3) 		950.6
(1.5) 		619.7
(-3) 		969.6
(1.8) 		929.4
(1.2) 		439
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175128_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20545
Sequence Type Exemplar sequence
Representative Public ID AV196483 NCBI
Target Description AV196483 /REP_DB=TREMBL Accession /GB=AV196483 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk654g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027216(11), AB031233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027216 NCBI Caenorhabditis elegans W02B12.15 (W02B12.15) mRNA, complete cds. 11/11 None
AB031233 NCBI Caenorhabditis elegans klp-17 mRNA for kinesin like protein, complete cds. 11/11 None
SNAP00000002912 ENSEMBL cdna:SNAP chromosome:CEL140:II:11465901:11469009:-1 9/11 None
GENEFINDER00000002920 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11468643:11469009:-1 11/11 None
W02B12.15.2 ENSEMBL cdna:known chromosome:CEL140:II:11468457:11469014:-1 gene:W02B12.15 11/11 None
W02B12.15.1 ENSEMBL cdna:known chromosome:CEL140:II:11468471:11469016:-1 gene:W02B12.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11468534-11468857(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B12.15
Entrez Gene 3565570 Entrez gene
SwissProt Q5FC71 EMBL-EBI
WormBase CE37932 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604845_S_AT similar to Protein C10orf70 cfa
CANINE:1599367_S_AT similar to Protein C10orf70 cfa
CANINE:1583801_AT similar to Protein C10orf70 cfa
CANINE_2:CFA.10250.1.A1_AT similar to Protein C10orf70 cfa
CANINE_2:CFA.599.1.S1_AT similar to Protein C10orf70 cfa
CANINE_2:CFAAFFX.19053.1.S1_S_AT similar to Protein C10orf70 cfa
CHICKEN:GGA.13314.1.S1_AT similar to DNA segment, Chr 10, ERATO Doi 214, expressed gga
HU35KSUBC:RC_AA431199_AT chromosome 10 open reading frame 70 hs
HG-U133A:218597_S_AT chromosome 10 open reading frame 70 hs
HG-U133_PLUS_2:218597_S_AT chromosome 10 open reading frame 70 hs
HG-U133A_2:218597_S_AT chromosome 10 open reading frame 70 hs
U133_X3P:G8923929_3P_S_AT chromosome 10 open reading frame 70 hs
HG-U95B:52088_AT chromosome 10 open reading frame 70 hs
U133_X3P:HS.160627.0.A1_3P_AT Chromosome 10 open reading frame 70 hs
HG-U133_PLUS_2:231282_AT Chromosome 10 open reading frame 70 hs
HG-U133B:231282_AT Chromosome 10 open reading frame 70 hs
HG-U95D:81883_AT Chromosome 10 open reading frame 70 hs
HG-U95C:66221_R_AT Chromosome 10 open reading frame 70 hs
HG-U95E:67038_AT Chromosome 10 open reading frame 70 hs
HG-U95D:71355_AT Chromosome 10 open reading frame 70 hs
HG-U95D:71652_AT Chromosome 10 open reading frame 70 hs
HG-U95D:86828_AT Chromosome 10 open reading frame 70 hs
HU35KSUBC:RC_W93407_AT Chromosome 10 open reading frame 70 hs
MU11KSUBA:AA546285_G_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MG-U74AV2:94526_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MG-U74CV2:167868_F_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOE430A:1416850_S_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOUSE430A_2:1416850_S_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOUSE430_2:1416850_S_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOE430A:1416849_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOUSE430A_2:1416849_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MOUSE430_2:1416849_AT DNA segment, Chr 10, ERATO Doi 214, expressed mm
MG-U74AV2:161504_I_AT DNA segment, Chr 10, ERATO Doi 214, expressed, mRNA (cDNA clone MGC:29914 IMAGE:5123692) mm
MU11KSUBA:AA546285_AT DNA segment, Chr 10, ERATO Doi 214, expressed, mRNA (cDNA clone MGC:29914 IMAGE:5123692) mm
RG-U34C:RC_AI228963_AT similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted) rn
RAE230A:1388327_AT similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted) rn
RAT230_2:1388327_AT similar to DNA segment, Chr 10, ERATO Doi 214, expressed (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA91398 Hypothetical protein W02B12.7 [Caenorhabditis elegans] ref|NP_496446.3| Kinesin-Like Protein family member (klp-17) [Caenorhabditis elegans] 0.0
blast BAA92262.1 kinesin like protein [Caenorhabditis elegans] 0.0
blast CAE59501 Hypothetical protein CBG02887 [Caenorhabditis briggsae] 1.0E-153
blast CAE59501 Hypothetical protein CBG02887 [Caenorhabditis briggsae] 1.0E-151
blast CAI46628 Hypothetical protein W02B12.15 [Caenorhabditis elegans] ref|NP_001022387.1| W02B12.15 [Caenorhabditis elegans] 8.0E-50
blast BAA92262.1 kinesin like protein [Caenorhabditis elegans] 3.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.1E-121
Pfam IPR001752 EMBL-EBI Kinesin, motor region 3.2E-120
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022387.1 1 7-29
W02B12.15.2 1 7-29
W02B12.15.1 1 7-29
SNAP00000002912 1 7-29
GENEFINDER00000002920 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:175128_S_AT
ttcggctcgctgcaactacaagatccagctcgactcgaataagatcgtcgacaccgtcga
tattgaggatattggagagaagaaggcattctgcagatgctggaagagcgagaagtggcc
atactgtgacggatcacatggaaagcacaacaaggagactggcgacaatgttggcccact
catcgtcaaatccgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCTCGCTGCAACTACAAGATC 403 695 26 Antisense
CAAGATCCAGCTCGACTCGAATAAG 272 185 44 Antisense
CGAATAAGATCGTCGACACCGTCGA 613 253 61 Antisense
GACACCGTCGATATTGAGGATATTG 560 367 75 Antisense
GAAGGCATTCTGCAGATGCTGGAAG 603 331 107 Antisense
GGAAGAGCGAGAAGTGGCCATACTG 465 531 127 Antisense
AAGTGGCCATACTGTGACGGATCAC 338 159 138 Antisense
GACGGATCACATGGAAAGCACAACA 425 377 153 Antisense
AAAGCACAACAAGGAGACTGGCGAC 618 123 167 Antisense
GACTGGCGACAATGTTGGCCCACTC 154 377 182 Antisense
GCCCACTCATCGTCAAATCCGAAAA 554 285 199 Antisense
Sequence Source Affymetrix Proprietary Database