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[175127_at]

Description AU111605 /REP_DB=TREMBL Accession /GB=AU111605 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk732g10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 86      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 439.2
(-1.4)
P 		501.7
(2.5)
P 		412.5
(-3)
P 		510.3
(3)
P 		98
B 367.1
(-3)
P 		412.7
(-2.2)
P 		368
(-3)
P 		719.4
(3)
P 		352
C 449.6
(-2.6)
P 		428.7
(-3)
P 		433.5
(-2.9)
P 		735.3
(3)
P 		307
avr 418.6
(-2.7) 		447.7
(-2) 		404.7
(-3) 		655
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 508
1 2 3 4 5 6 range
A 560.7
(-1.3)
P 		486.3
(-3)
P 		750.3
(3)
P 		705.1
(2)
P 		667.3
(1.1)
P 		737.3
(2.7)
P 		264
B 753.5
(-1.1)
P 		639.2
(-3)
P 		718
(-1.7)
P 		656.3
(-2.7)
P 		785.2
(-0.5)
P 		994.3
(3)
P 		355
C 600.4
(-1.9)
P 		628.2
(-1.6)
P 		515.7
(-3)
P 		763.4
(0.1)
P 		699.9
(-0.7)
P 		988.1
(3)
P 		472
avr 638.2
(-2) 		584.6
(-3) 		661.3
(-1.6) 		708.3
(-0.7) 		717.5
(-0.5) 		906.6
(3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 159.9
(3)
P 		108.9
(-0.6)
P 		107.8
(-0.7)
P 		74.7
(-3)
P 		85
B 117.1
(-0.2)
P 		101.9
(-1.5)
P 		85.3
(-3)
P 		153.3
(3)
P 		68
C 148.8
(2.5)
P 		123.3
(-3)
P 		151.1
(3)
P 		124
(-2.8)
P 		28
avr 141.9
(3) 		111.4
(-3) 		114.7
(-2.4) 		117.3
(-1.8) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 103.4
(-3)
P 		173
(1.3)
P 		163.4
(0.7)
P 		178.8
(1.6)
P 		201.4
(3)
P 		179.5
(1.7)
P 		98
B 262.2
(-0.3)
P 		212.8
(-1.8)
P 		174.4
(-3)
P 		173.8
(-3)
P 		319
(1.4)
P 		370.8
(3)
P 		197
C 222.5
(-0.3)
P 		191.7
(-1.2)
P 		131.3
(-3)
P 		153.5
(-2.3)
P 		226.5
(-0.1)
P 		330.8
(3)
P 		200
avr 196
(-1.3) 		192.5
(-1.4) 		156.4
(-3) 		168.7
(-2.5) 		249
(1) 		293.7
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20254
Sequence Type Exemplar sequence
Representative Public ID AU111605 NCBI
Target Description AU111605 /REP_DB=TREMBL Accession /GB=AU111605 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk732g10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059928 NCBI Caenorhabditis elegans F43G9.13 (F43G9.13) mRNA, complete cds. 11/11 None
GENEFINDER00000043556 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8613425:8614657:1 11/11 None
F43G9.13.1 ENSEMBL cdna:known chromosome:CEL140:I:8613386:8614678:1 gene:F43G9.13 11/11 None
F43G9.13.2 ENSEMBL cdna:known chromosome:CEL140:I:8613388:8614657:1 gene:F43G9.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043534 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8613662-8614558(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G9.13
Entrez Gene 172654 Entrez gene
SwissProt Q95QG3 EMBL-EBI
WormBase CE27163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42297 Hypothetical protein F43G9.13 [Caenorhabditis elegans] ref|NP_492329.1| F43G9.13 [Caenorhabditis elegans] 1.0E-65
blast CAE67094 Hypothetical protein CBG12505 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492329.1 3 48-70,77-99,114-136
F43G9.13.1 3 48-70,77-99,114-136
F43G9.13.2 3 48-70,77-99,114-136
GENEFINDER00000043556 3 48-70,77-99,114-136
Sequence
Target Sequence 
>C. ELEGANS:175127_AT
atatttctttggatgtcactttcttttatggtaattagtctcggagccacaattctttcc
cttttcactcttcgaaaacatccatacgtttgctttattccaattccatttatcataatg
atgttcatcattcctttcgtttttggtgctcctacgtcaatggttctcgcactggcaatg
tacgcttcgaaaaatgctgtgagcacttggtattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTCTTTGGATGTCACTTTCTT 655 19 19 Antisense
GATGTCACTTTCTTTTATGGTAATT 25 401 30 Antisense
TGGTAATTAGTCTCGGAGCCACAAT 22 553 47 Antisense
TTCCCTTTTCACTCTTCGAAAACAT 346 685 75 Antisense
ACATCCATACGTTTGCTTTATTCCA 73 107 96 Antisense
GCTTTATTCCAATTCCATTTATCAT 171 305 110 Antisense
TGTTCATCATTCCTTTCGTTTTTGG 28 563 140 Antisense
ATCATTCCTTTCGTTTTTGGTGCTC 618 29 145 Antisense
TCAATGGTTCTCGCACTGGCAATGT 260 633 175 Antisense
GCACTGGCAATGTACGCTTCGAAAA 656 315 187 Antisense
AATGCTGTGAGCACTTGGTATTGTG 303 165 211 Antisense
Sequence Source Affymetrix Proprietary Database