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[175125_at]

Description AU113076_rc /REP_DB=TREMBL Accession /GB=AU113076 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 91      6grp_total > 10      4grp_total > 31      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 556.6
(3)
P 		114.4
(-2.7)
P 		93.9
(-3)
P 		490.7
(2.1)
P 		463
B 495.5
(3)
P 		143.9
(-2.4)
P 		105.6
(-3)
P 		304.7
(0.1)
P 		390
C 598.9
(3)
P 		167.6
(-2.4)
P 		120.1
(-3)
P 		409.2
(0.6)
P 		479
avr 550.3
(3) 		142
(-2.5) 		106.5
(-3) 		401.5
(1) 		444

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 190
(-2.3)
P 		194.5
(-2)
P 		271.6
(3)
P 		193.7
(-2)
P 		202.1
(-1.5)
P 		178.4
(-3)
P 		93
B 142.8
(-3)
P 		212.8
(0.4)
P 		170
(-1.7)
P 		235.3
(1.4)
P 		144.5
(-2.9)
P 		268.1
(3)
P 		125
C 164.4
(-2.6)
P 		276.2
(3)
P 		162
(-2.7)
P 		193
(-1.2)
P 		156.5
(-3)
P 		202.1
(-0.7)
P 		120
avr 165.7
(-3) 		227.8
(3) 		201.2
(0.4) 		207.3
(1) 		167.7
(-2.8) 		216.2
(1.9) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 202.7
(3)
P 		24.8
(-3)
P 		24.5
(-3)
P 		71.8
(-1.4)
P 		178
B 158
(3)
P 		35.5
(-2.5)
P 		24.5
(-3)
P 		64.9
(-1.2)
P 		134
C 198.2
(3)
P 		48.2
(-2.8)
P 		41.8
(-3)
P 		69
(-2)
P 		156
avr 186.3
(3) 		36.2
(-2.8) 		30.3
(-3) 		68.6
(-1.5) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 35
(-3)
P 		69.2
(3)
P 		59.2
(1.2)
P 		49.1
(-0.5)
P 		61
(1.6)
P 		43.4
(-1.5)
P 		34
B 49.7
(-2.1)
P 		70.8
(0)
P 		41.3
(-3)
P 		62.3
(-0.9)
P 		58.7
(-1.2)
P 		100
(3)
P 		59
C 60.9
(-0.1)
P 		84.3
(3)
P 		41.2
(-2.7)
P 		38.8
(-3)
P 		50.6
(-1.4)
P 		67.6
(0.8)
P 		46
avr 48.5
(-2.7) 		74.8
(3) 		47.2
(-3) 		50.1
(-2.4) 		56.8
(-0.9) 		70.3
(2) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20881
Sequence Type Exemplar sequence
Representative Public ID AU113076 NCBI
Target Description AU113076_rc /REP_DB=TREMBL Accession /GB=AU113076 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066540 NCBI Caenorhabditis elegans K02D10.4 (K02D10.4) mRNA, complete cds. 11/11 None
K02D10.4 ENSEMBL cdna:known chromosome:CEL140:III:8777810:8779914:-1 gene:K02D10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8777867-8778147(-) 90.36 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D10.4
Entrez Gene 176234 Entrez gene
SwissProt P34495 EMBL-EBI
WormBase CE00244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28079 Hypothetical protein K02D10.4 [Caenorhabditis elegans] ref|NP_498941.1| K02D10.4 [Caenorhabditis elegans] sp|P34495|YMQ4_CAEEL Hypothetical protein K02D10.4 in chromosome III 1.0E-116
blast CAE62747 Hypothetical protein CBG06911 [Caenorhabditis briggsae] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:175125_AT
ttttctacgcctccataatatcacttttgtattaaaacaaagcaaatatttccatttcat
ccaatctcccaatatttttcttctcgcgttctctgatcctctctcattctaaccatttca
ttttccatttcttaaaattcccggtggtcttagccaaaactttttccagttttctagtcc
atctcaaaaatctatacgtcacaaaaatacatttcacaactcaaaaaacagtcgcctctt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTACGCCTCCATAATATCACT 480 673 22 Antisense
ACGCCTCCATAATATCACTTTTGTA 545 91 28 Antisense
AATATTTCCATTTCATCCAATCTCC 81 175 66 Antisense
CATCCAATCTCCCAATATTTTTCTT 219 211 79 Antisense
TCTCTCATTCTAACCATTTCATTTT 171 613 121 Antisense
CATTCTAACCATTTCATTTTCCATT 286 217 126 Antisense
TGGTCTTAGCCAAAACTTTTTCCAG 231 553 166 Antisense
TCCAGTTTTCTAGTCCATCTCAAAA 687 589 186 Antisense
CATCTCAAAAATCTATACGTCACAA 195 211 201 Antisense
CAAAAATACATTTCACAACTCAAAA 357 189 223 Antisense
CAACTCAAAAAACAGTCGCCTCTTG 190 185 238 Antisense
Sequence Source Affymetrix Proprietary Database