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[175124_at]

Description AV177645_rc /REP_DB=TREMBL Accession /GB=AV177645 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 02      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 635
1 2 3 4 range
A 1132.5
(3)
P 		648.9
(-1.8)
P 		529.9
(-3)
P 		597.8
(-2.3)
P 		603
B 1080.6
(3)
P 		650.6
(-1.8)
P 		546.2
(-3)
P 		735.1
(-0.9)
P 		534
C 1025.9
(3)
P 		620.9
(-1.6)
P 		497.4
(-3)
P 		594
(-1.9)
P 		529
avr 1079.7
(3) 		640.1
(-1.8) 		524.5
(-3) 		642.3
(-1.7) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 934.7
(3)
P 		781.4
(1.4)
P 		846.5
(2.1)
P 		565.9
(-0.8)
P 		433.1
(-2.1)
P 		344.9
(-3)
P 		590
B 1183.3
(3)
P 		818.9
(0.3)
P 		772.8
(-0)
P 		713.4
(-0.5)
P 		454.7
(-2.4)
P 		368.2
(-3)
P 		815
C 1020.6
(3)
P 		848.9
(1.4)
P 		753.5
(0.5)
P 		588.6
(-1)
P 		481.6
(-2)
P 		377.1
(-3)
P 		644
avr 1046.2
(3) 		816.4
(1) 		790.9
(0.8) 		622.6
(-0.7) 		456.5
(-2.2) 		363.4
(-3) 		683
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 412.3
(3)
P 		140.9
(-2)
P 		138.5
(-2.1)
P 		87.5
(-3)
P 		325
B 344.6
(3)
P 		160.7
(-2.1)
P 		126.6
(-3)
P 		156.7
(-2.2)
P 		218
C 339.6
(3)
P 		178.5
(-1)
P 		173.3
(-1.2)
P 		100.2
(-3)
P 		239
avr 365.5
(3) 		160
(-1.9) 		146.1
(-2.3) 		114.8
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 172.3
(-0.3)
P 		277.9
(3)
P 		184.4
(0.1)
P 		143.5
(-1.2)
P 		130.7
(-1.6)
P 		84
(-3)
P 		194
B 411.7
(3)
P 		272.6
(-0)
P 		187.7
(-1.9)
P 		189
(-1.9)
P 		184.7
(-2)
P 		137.3
(-3)
P 		274
C 378.3
(3)
P 		259
(0.2)
P 		191.8
(-1.3)
P 		118.4
(-3)
P 		155.8
(-2.1)
P 		126.2
(-2.8)
P 		260
avr 320.8
(3) 		269.8
(1.5) 		188
(-0.9) 		150.3
(-2) 		157.1
(-1.8) 		115.8
(-3) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21039
Sequence Type Exemplar sequence
Representative Public ID AV177645 NCBI
Target Description AV177645_rc /REP_DB=TREMBL Accession /GB=AV177645 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067078 NCBI Caenorhabditis elegans Y66D12A.24 (Y66D12A.24) mRNA, complete cds. 11/11 None
Y66D12A.24 ENSEMBL cdna:known chromosome:CEL140:III:11496747:11500581:1 gene:Y66D12A.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020807 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020825 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11499169-11500513(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.24
Entrez Gene 176579 Entrez gene
SwissProt Q95PZ5 EMBL-EBI
WormBase CE31843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70143 Hypothetical protein Y66D12A.24 [Caenorhabditis elegans] ref|NP_499479.2| Y66D12A.24 [Caenorhabditis elegans] 1.0E-124
blast CAE67705 Hypothetical protein CBG13276 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499479.2 4 93-112,122-144,151-173,230-252
Y66D12A.24 4 93-112,122-144,151-173,230-252
Sequence
Target Sequence 
>C. ELEGANS:175124_AT
atgacaccagcagaatctcgtacatattctcgcatatggataaatatgactttgcaaaat
gcctgtggcagttgaaagttggagttgctgtgaattctgtgcaatttgtgattgccgcta
ttgaggtttttctcaacattctctcggcaattctgtgcatgaagaggacgtgtacatcgt
gcttctaacaactcttcaattttctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACACCAGCAGAATCTCGTACAT 356 45 14 Antisense
GAATCTCGTACATATTCTCGCATAT 361 329 26 Antisense
GACTTTGCAAAATGCCTGTGGCAGT 150 373 61 Antisense
GCCTGTGGCAGTTGAAAGTTGGAGT 274 283 74 Antisense
GTTGGAGTTGCTGTGAATTCTGTGC 217 437 91 Antisense
GATTGCCGCTATTGAGGTTTTTCTC 35 435 123 Antisense
TTGAGGTTTTTCTCAACATTCTCTC 373 703 134 Antisense
ATTCTCTCGGCAATTCTGTGCATGA 344 11 151 Antisense
AGAGGACGTGTACATCGTGCTTCTA 101 69 176 Antisense
TACATCGTGCTTCTAACAACTCTTC 583 643 186 Antisense
CTAACAACTCTTCAATTTTCTCCAA 91 225 198 Antisense
Sequence Source Affymetrix Proprietary Database