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[175123_at]

Description AV200790_rc /REP_DB=TREMBL Accession /GB=AV200790 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 97      6grp_total > 69      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 848.9
(-1.1)
P 		970.1
(0.6)
P 		1144.1
(3)
P 		707.4
(-3)
P 		437
B 837.3
(-1)
P 		1133.7
(3)
P 		969.1
(0.8)
P 		692.3
(-3)
P 		441
C 878.5
(-0.4)
P 		1204.9
(3)
P 		1139.2
(2.3)
P 		627.4
(-3)
P 		578
avr 854.9
(-0.5) 		1102.9
(3) 		1084.1
(2.7) 		675.7
(-3) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 782
1 2 3 4 5 6 range
A 969.2
(-1.3)
P 		826.7
(-2.6)
P 		803.3
(-2.9)
P 		790
(-3)
P 		1144.8
(0.4)
P 		1409.1
(3)
P 		619
B 1103.4
(0.8)
P 		869.8
(-1)
P 		627.6
(-3)
P 		1003.8
(0)
P 		892.6
(-0.9)
P 		1371.3
(3)
P 		744
C 1006
(-1.1)
P 		866.2
(-2.9)
P 		861.1
(-3)
P 		867.2
(-2.9)
P 		1012.1
(-1.1)
P 		1328.1
(3)
P 		467
avr 1026.2
(-0.4) 		854.2
(-2.1) 		764
(-3) 		887
(-1.8) 		1016.5
(-0.5) 		1369.5
(3) 		606
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 309.1
(3)
P 		210.6
(0.1)
P 		299.1
(2.7)
P 		103.5
(-3)
P 		206
B 267
(2.4)
P 		280
(3)
P 		224.6
(0.5)
P 		147.5
(-3)
P 		133
C 290.8
(0.8)
P 		346.4
(2)
P 		397
(3)
P 		105.8
(-3)
P 		291
avr 289
(2.4) 		279
(2.1) 		306.9
(3) 		118.9
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 178.7
(-2.9)
P 		294
(1.2)
P 		174.9
(-3)
P 		200.4
(-2.1)
P 		345.5
(3)
P 		343.1
(2.9)
P 		171
B 383.9
(0.9)
P 		289.5
(-0.7)
P 		152.4
(-3)
P 		265.9
(-1.1)
P 		362.6
(0.5)
P 		511.3
(3)
P 		359
C 372.9
(1.4)
P 		264.3
(-1)
P 		219.2
(-2)
P 		174.4
(-3)
P 		327.5
(0.4)
P 		444.6
(3)
P 		270
avr 311.8
(0.1) 		282.6
(-0.6) 		182.2
(-3) 		213.6
(-2.2) 		345.2
(0.9) 		433
(3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21531
Sequence Type Exemplar sequence
Representative Public ID AV200790 NCBI
Target Description AV200790_rc /REP_DB=TREMBL Accession /GB=AV200790 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk580f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171360 NCBI Caenorhabditis elegans Y73B6BL.33 (Y73B6BL.33) mRNA, complete cds. 11/11 None
Y73B6BL.33 ENSEMBL cdna:known chromosome:CEL140:IV:6373156:6376506:-1 gene:Y73B6BL.33 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6373171-6373539(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B6BL.33
Entrez Gene 177398 Entrez gene
SwissProt Q8MXR2 EMBL-EBI
WormBase CE30324 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601699_S_AT similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) cfa
CANINE:1595595_AT similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) cfa
CANINE_2:CFA.1504.1.S1_A_AT similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) cfa
CANINE_2:CFAAFFX.1449.1.S1_AT similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) cfa
CANINE_2:CFAAFFX.1450.1.S1_S_AT similar to Heterogeneous nuclear ribonucleoprotein H (hnRNP H) cfa
CHICKEN:GGA.4880.1.S1_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) gga
CHICKEN:GGAAFFX.11592.1.S1_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) gga
HG-U133_PLUS_2:201031_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A:201031_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-FOCUS:201031_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A_2:201031_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HU35KSUBB:RC_H91703_F_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HU35KSUBB:RC_H91703_I_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HUGENEFL:L22009_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:G5031752_3P_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S2_3P_X_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S2_3P_A_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S1_3P_X_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S1_3P_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S1_3P_A_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:213472_3P_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:213470_3P_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A_2:213470_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133_PLUS_2:213470_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A:213470_S_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A_2:213472_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133_PLUS_2:213472_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A:213472_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U95AV2:41292_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U95E:79883_AT heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A_2:213619_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133_PLUS_2:213619_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U133A:213619_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U95AV2:33845_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U95C:55231_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HG-U95D:87718_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
HU35KSUBB:RC_R91170_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.1.A1_3P_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
U133_X3P:HS.245710.2.S2_3P_AT Heterogeneous nuclear ribonucleoprotein H1 (H) hs
MOUSE430A_2:1415872_AT heterogeneous nuclear ribonucleoprotein H1 mm
MOUSE430_2:1415872_AT heterogeneous nuclear ribonucleoprotein H1 mm
MOE430A:1415872_AT heterogeneous nuclear ribonucleoprotein H1 mm
MU11KSUBB:Y14196_S_AT heterogeneous nuclear ribonucleoprotein H1 mm
MG-U74AV2:93990_AT heterogeneous nuclear ribonucleoprotein H1 mm
MU19KSUBA:TC15116_AT Heterogeneous nuclear ribonucleoprotein H1 (Hnrph1), mRNA mm
MU19KSUBB:TC32123_AT Heterogeneous nuclear ribonucleoprotein H1 (Hnrph1), mRNA mm
MU19KSUBC:TC41923_S_AT Heterogeneous nuclear ribonucleoprotein H1 (Hnrph1), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAM44389 Hypothetical protein Y73B6BL.33 [Caenorhabditis elegans] ref|NP_741422.1| Y73B6BL.33 [Caenorhabditis elegans] 0.0
blast CAE61553 Hypothetical protein CBG05462 [Caenorhabditis briggsae] 1.0E-149
blast XP_699891 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein H1-like protein [Danio rerio] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.3E-13
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.5E-11
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.7E-7
Sequence
Target Sequence 
>C. ELEGANS:175123_AT
ctgccaaaatcccagttctttcgattttccagacaaatgagcattgttccttataatcta
gtgtatcactttacttttttctctgttctccgaggtctcggttatttattatcttgttct
catgattttccaacgcgaacgtcttattttacctctgttctgttcaactatcaaaatatc
atgctttgatcttcctacacaatttttattaattaatagatttctgaatttgagactttc
attgttttttttttctgtatcctttttgatatttaatggctgttcgccccgcgttttaat
atgttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCAAAATCCCAGTTCTTTCGAT 533 235 13 Antisense
GAGCATTGTTCCTTATAATCTAGTG 492 387 51 Antisense
ATCACTTTACTTTTTTCTCTGTTCT 70 29 77 Antisense
TCTCTGTTCTCCGAGGTCTCGGTTA 115 613 92 Antisense
GTCTCGGTTATTTATTATCTTGTTC 375 471 107 Antisense
TTGTTCTCATGATTTTCCAACGCGA 461 707 126 Antisense
AACGTCTTATTTTACCTCTGTTCTG 167 143 150 Antisense
TTACCTCTGTTCTGTTCAACTATCA 659 677 161 Antisense
ATCATGCTTTGATCTTCCTACACAA 594 29 190 Antisense
GATATTTAATGGCTGTTCGCCCCGC 580 425 280 Antisense
TCGCCCCGCGTTTTAATATGTTACA 565 599 296 Antisense
Sequence Source Affymetrix Proprietary Database