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[175122_at]

Description AV199409_rc /REP_DB=TREMBL Accession /GB=AV199409 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545e5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 42      6grp_total > 22      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 367.3
(3)
P 		256.4
(0.9)
P 		174.4
(-0.7)
P 		51
(-3)
A 		316
B 314.2
(2.7)
P 		326.7
(3)
P 		176.8
(-0.2)
P 		46.5
(-3)
A 		280
C 465.6
(3)
P 		309.9
(0.8)
P 		253.8
(0)
P 		41.9
(-3)
P 		424
avr 382.4
(3) 		297.7
(1.5) 		201.7
(-0.2) 		46.5
(-3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 695
1 2 3 4 5 6 range
A 325.6
(0.4)
P 		560.9
(3)
P 		514.3
(2.5)
P 		242.2
(-0.5)
P 		81.8
(-2.3)
P 		18.1
(-3)
A 		543
B 555.9
(2.4)
P 		613.6
(3)
P 		568.8
(2.5)
P 		258
(-0.7)
P 		94.3
(-2.4)
P 		41.8
(-3)
P 		572
C 503
(1.1)
P 		713.5
(3)
P 		285.8
(-0.9)
P 		217.2
(-1.5)
P 		84.4
(-2.7)
P 		52.8
(-3)
P 		661
avr 461.5
(1.3) 		629.3
(3) 		456.3
(1.2) 		239.1
(-1) 		86.8
(-2.5) 		37.6
(-3) 		592
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 133.8
(3)
P 		55.7
(-0.7)
P 		45.6
(-1.2)
P 		7.5
(-3)
A 		126
B 100.2
(3)
P 		80.7
(1.7)
P 		41
(-0.9)
P 		9.9
(-3)
A 		90
C 154.1
(3)
P 		89.1
(0.3)
P 		88.5
(0.3)
P 		7.1
(-3)
P 		147
avr 129.4
(3) 		75.2
(0.3) 		58.4
(-0.5) 		8.2
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 60
(-1.3)
P 		199.5
(3)
P 		112
(0.3)
P 		61.4
(-1.2)
P 		24.7
(-2.4)
P 		4.4
(-3)
A 		195
B 193.4
(2.7)
P 		204.3
(3)
P 		138.1
(0.9)
P 		68.3
(-1.3)
P 		38.3
(-2.3)
P 		15.6
(-3)
P 		189
C 186.4
(2.1)
P 		217.7
(3)
P 		72.8
(-1.3)
P 		43.7
(-2.2)
P 		27.3
(-2.7)
P 		17.7
(-3)
P 		200
avr 146.6
(1.1) 		207.2
(3) 		107.6
(-0.1) 		57.8
(-1.6) 		30.1
(-2.5) 		12.6
(-3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21750
Sequence Type Exemplar sequence
Representative Public ID AV199409 NCBI
Target Description AV199409_rc /REP_DB=TREMBL Accession /GB=AV199409 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072727 NCBI Caenorhabditis elegans C16D9.1 (C16D9.1) mRNA, complete cds. 11/11 A 
SNAP00000043380 ENSEMBL cdna:SNAP chromosome:CEL140:V:8261906:8263735:1 9/11 None
GENEFINDER00000043386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8262062:8263735:1 9/11 None
C16D9.1 ENSEMBL cdna:known chromosome:CEL140:V:8261906:8263894:1 gene:C16D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8262996-8263818(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.1
Entrez Gene 179207 Entrez gene
SwissProt Q22902 EMBL-EBI
WormBase CE27695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18288 Hypothetical protein C16D9.1 [Caenorhabditis elegans] ref|NP_505128.1| C16D9.1 [Caenorhabditis elegans] 0.0
blast CAE66091 Hypothetical protein CBG11308 [Caenorhabditis briggsae] 1.0E-178
blast AAB18288 Hypothetical protein C16D9.1 [Caenorhabditis elegans] ref|NP_505128.1| C16D9.1 [Caenorhabditis elegans] 1.0E-172
blast CAE66091 Hypothetical protein CBG11308 [Caenorhabditis briggsae] 1.0E-155
blast CAE74014 Hypothetical protein CBG21662 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 6.7E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 3.4E-8
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:175122_AT
gtggttaaagcttattcactggaacaatgtactgatatgtgcagactttgcactaaatgc
ttggtaaagcagaagaaatgccaatctgtggcttttgatatttcacgcgagctctgtgca
cttgcctcgaaacgattgtcggatggtggttcatttactgatgacatcatttaccacaac
cgaatggattgttgattttcagattctttttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTTAAAGCTTATTCACTGGAAC 232 487 19 Antisense
TGTACTGATATGTGCAGACTTTGCA 412 555 46 Antisense
GCAGACTTTGCACTAAATGCTTGGT 502 313 59 Antisense
GCCAATCTGTGGCTTTTGATATTTC 580 277 98 Antisense
TGATATTTCACGCGAGCTCTGTGCA 403 563 114 Antisense
TCTGTGCACTTGCCTCGAAACGATT 348 605 131 Antisense
GCCTCGAAACGATTGTCGGATGGTG 548 281 142 Antisense
GTCGGATGGTGGTTCATTTACTGAT 706 471 156 Antisense
GATGACATCATTTACCACAACCGAA 336 411 178 Antisense
AACCGAATGGATTGTTGATTTTCAG 157 145 196 Antisense
GTTGATTTTCAGATTCTTTTTCAAT 35 439 209 Antisense
Sequence Source Affymetrix Proprietary Database