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[175120_at]

Description AV203160 /REP_DB=TREMBL Accession /GB=AV203160 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559g5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 37      6grp_total > 90      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5088
1 2 3 4 range
A 5399.7
(0.4)
P 		3169.4
(-3)
P 		3873.2
(-1.9)
P 		7137.7
(3)
P 		3968
B 6573.8
(1.8)
P 		4064.1
(-1.2)
P 		2515.1
(-3)
P 		7603.4
(3)
P 		5088
C 5350.4
(0.4)
P 		4163
(-1.6)
P 		3275.6
(-3)
P 		6982.6
(3)
P 		3707
avr 5774.6
(0.8) 		3798.8
(-2.1) 		3221.3
(-3) 		7241.2
(3) 		4020

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2733
1 2 3 4 5 6 range
A 6268.3
(3)
P 		4399.1
(-2.8)
P 		4827.4
(-1.4)
P 		5057.8
(-0.7)
P 		4321.5
(-3)
P 		4534.8
(-2.3)
P 		1947
B 3810.7
(-2.2)
P 		5028.8
(1.2)
P 		3535.5
(-3)
P 		5645.8
(3)
P 		4071.7
(-1.5)
P 		4309.3
(-0.8)
P 		2110
C 5072.2
(0.2)
P 		4580.2
(-3)
P 		5263.7
(1.4)
P 		5510.1
(3)
P 		4617.7
(-2.8)
P 		5412.9
(2.4)
P 		930
avr 5050.4
(1) 		4669.4
(-1.1) 		4542.2
(-1.8) 		5404.6
(3) 		4337
(-3) 		4752.3
(-0.7) 		1068
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1514
1 2 3 4 range
A 1966
(3)
P 		688
(-3)
P 		1012.5
(-1.5)
P 		1044.8
(-1.3)
P 		1278
B 2096.3
(3)
P 		1003.7
(-1.3)
P 		582.8
(-3)
P 		1620.3
(1.1)
P 		1514
C 1771.1
(3)
P 		1196.9
(-2.5)
P 		1141.7
(-3)
P 		1177.4
(-2.7)
P 		629
avr 1944.5
(3) 		962.9
(-2.7) 		912.3
(-3) 		1280.8
(-0.9) 		1032

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1022
1 2 3 4 5 6 range
A 1155.5
(-1.8)
P 		1564.5
(3)
P 		1051.3
(-3)
P 		1282.8
(-0.3)
P 		1304
(-0)
P 		1104.1
(-2.4)
P 		513
B 1326
(0.4)
P 		1673.9
(3)
P 		858.5
(-3)
P 		1495.4
(1.7)
P 		1654.3
(2.9)
P 		1606.9
(2.5)
P 		815
C 1880
(3)
P 		1397.5
(-0.8)
P 		1339.7
(-1.2)
P 		1108.1
(-3)
P 		1494.2
(0)
P 		1812
(2.5)
P 		772
avr 1453.8
(1.8) 		1545.3
(3) 		1083.2
(-3) 		1295.4
(-0.2) 		1484.2
(2.2) 		1507.7
(2.5) 		462
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20554
Sequence Type Exemplar sequence
Representative Public ID AV203160 NCBI
Target Description AV203160 /REP_DB=TREMBL Accession /GB=AV203160 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559g5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV203160
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV203160 AV203160 /REP_DB=TREMBL Accession /GB=AV203160 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559g5 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8786665-8786986(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175120_AT
cgcctcgttccaaaaccagatacacacattcaaaatgtttcttggttcgagattgtctcg
aatccgacgacatagactctccgatgcttgtgtcatgtcgaatggaattttcgagtgttc
tttttcgatttgaatcgtcatcctttttctcatgccgcctcgtttcagtcatttttcgga
cgctgagaatgacatgcaactcatgtcctctacgatcctaactgactccggagtttaacg
aatggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCTCGTTCCAAAACCAGATACAC 56 257 54 Antisense
ATGTTTCTTGGTTCGAGATTGTCTC 638 47 88 Antisense
GAGATTGTCTCGAATCCGACGACAT 232 397 102 Antisense
ACGACATAGACTCTCCGATGCTTGT 105 93 120 Antisense
TCTCCGATGCTTGTGTCATGTCGAA 240 611 131 Antisense
GAGTGTTCTTTTTCGATTTGAATCG 211 401 166 Antisense
TTTGAATCGTCATCCTTTTTCTCAT 512 667 182 Antisense
CAGTCATTTTTCGGACGCTGAGAAT 675 205 219 Antisense
ACATGCAACTCATGTCCTCTACGAT 426 107 245 Antisense
CTCTACGATCCTAACTGACTCCGGA 665 229 261 Antisense
GACTCCGGAGTTTAACGAATGGTCA 48 365 277 Antisense
Sequence Source Affymetrix Proprietary Database