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[175119_at]

Description AV192917 /REP_DB=TREMBL Accession /GB=AV192917 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk611c2 : 5prime end, single read.
Cluster 6grp_total > 49      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 20.7
(-2.4)
A 		17.7
(-2.5)
A 		4.1
(-3)
A 		159.8
(3)
P 		156
B 18.2
(-0.5)
A 		3.7
(-3)
A 		4.8
(-2.8)
A 		38.8
(3)
A 		35
C 11.9
(-2.5)
A 		2.6
(-3)
A 		2.9
(-3)
A 		115.2
(3)
P 		113
avr 16.9
(-2.2) 		8
(-2.8) 		3.9
(-3) 		104.6
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.9
(3)
A 		4.6
(-2.7)
A 		3.7
(-2.8)
A 		2.3
(-3)
A 		14.9
(-1.4)
A 		25.9
(0)
A 		47
B 2.6
(-2.9)
A 		24.5
(1.5)
A 		2
(-3)
A 		1.9
(-3)
A 		22.4
(1)
A 		32.3
(3)
A 		30
C 36.3
(2.9)
A 		32.6
(2.2)
A 		4
(-3)
A 		4.4
(-2.9)
A 		15.9
(-0.8)
A 		36.7
(3)
A 		33
avr 29.3
(2.5) 		20.6
(0.7) 		3.2
(-2.9) 		2.9
(-3) 		17.7
(0.1) 		31.6
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 7.5
(-1.3)
A 		3.8
(-2.3)
A 		1.1
(-3)
A 		23.4
(3)
P 		22
B 5.8
(1)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		8.3
(3)
A 		7
C 3.9
(-2)
A 		0.7
(-3)
A 		1
(-2.9)
A 		19.4
(3)
P 		19
avr 5.7
(-1.3) 		1.8
(-2.7) 		1.1
(-3) 		17
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9
(3)
A 		1.6
(-2.3)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		4.5
(-0.2)
A 		6.3
(1.1)
A 		8
B 0.9
(-2.8)
A 		8.2
(1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		9.1
(1.4)
A 		12.1
(3)
A 		12
C 13.5
(3)
A 		9.9
(1.3)
A 		1
(-3)
A 		0.9
(-3)
A 		5.1
(-1)
A 		12.3
(2.4)
A 		13
avr 7.8
(1.5) 		6.6
(0.7) 		0.8
(-2.9) 		0.7
(-3) 		6.2
(0.5) 		10.2
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20815
Sequence Type Exemplar sequence
Representative Public ID AV192917 NCBI
Target Description AV192917 /REP_DB=TREMBL Accession /GB=AV192917 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk611c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170971 NCBI Caenorhabditis elegans W08F4.12 (W08F4.12) mRNA, complete cds. 11/11 None
W08F4.12 ENSEMBL cdna:known chromosome:CEL140:II:583078:584401:-1 gene:W08F4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029478 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018839 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12014930-12015202(+) 95.0 95.0
chrII:583087-583367(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.12
Entrez Gene 173451 Entrez gene
SwissProt Q8WQH4 EMBL-EBI
WormBase CE30207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65799 Hypothetical protein W08F4.12 [Caenorhabditis elegans] ref|NP_740968.1| W08F4.12 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.8E-5
Sequence
Target Sequence 
>C. ELEGANS:175119_AT
atagtcttacaggtccagcaagtgatgtcgtagcggataacatcacggttatccggccag
aaccgctgcccaagacaacgactaggcctgccaacgtttggaggtcacgatgcaagcgcg
ccccaccggacggcgcgcggatctgaattgccggcgccaactctaattgtcatcattctc
gacttttcttggccccgcccaattcccctatataaggagccggaaacgctcattctaggt
cttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTCTTACAGGTCCAGCAAGTGA 18 23 13 Antisense
CCAGCAAGTGATGTCGTAGCGGATA 617 271 27 Antisense
CGCTGCCCAAGACAACGACTAGGCC 263 255 76 Antisense
CGACTAGGCCTGCCAACGTTTGGAG 119 251 91 Antisense
GGCCTGCCAACGTTTGGAGGTCACG 306 543 97 Antisense
TTTGGAGGTCACGATGCAAGCGCGC 280 665 109 Antisense
GGCGCCAACTCTAATTGTCATCATT 134 543 165 Antisense
GTCATCATTCTCGACTTTTCTTGGC 570 467 181 Antisense
CCGCCCAATTCCCCTATATAAGGAG 509 261 207 Antisense
TAAGGAGCCGGAAACGCTCATTCTA 490 637 225 Antisense
GGAAACGCTCATTCTAGGTCTTCTC 688 527 234 Antisense
Sequence Source Affymetrix Proprietary Database